Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 2.8e-64 248.4 126 100.0
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 2.0e-57 225.7 126 90.5
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 2.9e-56 221.9 126 87.3
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 7.8e-54 213.8 118 88.1
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 2.3e-53 212.2 118 88.1
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 4.9e-32 141.4 107 71.0
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 2.4e-31 139.0 107 69.2
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 7.1e-31 137.5 110 65.5
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 7.1e-31 137.5 110 65.5
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 3.9e-29 131.7 110 63.6
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 6.6e-29 131.0 110 62.7
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 1.1e-28 130.2 104 58.7
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 1.9e-28 129.4 110 60.9
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 4.3e-28 128.3 102 64.7
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 7.3e-28 127.5 112 61.6
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 2.8e-27 125.6 112 58.9
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 3.6e-27 125.2 107 62.6
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 4.7e-27 124.8 110 60.0
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 4.7e-27 124.8 110 60.9
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 6.2e-27 124.4 107 61.7
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 8.1e-27 124.0 98 63.3
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.1e-26 123.6 96 67.7
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 1.1e-26 123.6 96 67.7
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 1.4e-26 123.2 110 60.9
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 3.1e-26 122.1 110 60.0
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 3.1e-26 122.1 110 60.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.1e-26 122.1 121 54.5
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 6.8e-26 120.9 107 60.7
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 6.8e-26 120.9 107 60.7
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 6.8e-26 120.9 107 60.7
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 6.8e-26 120.9 107 60.7
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 6.8e-26 120.9 107 60.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 8.9e-26 120.6 107 57.9
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 3.4e-25 118.6 66 90.9
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 5.8e-25 117.9 98 64.3
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 5.8e-25 117.9 98 64.3
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 5.8e-25 117.9 98 64.3
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 1.3e-24 116.7 86 67.4
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 8.4e-24 114.0 112 59.8
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 3.2e-23 112.1 106 55.7
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 1.2e-22 110.2 102 56.9
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 3.5e-22 108.6 109 53.2
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 4.6e-22 108.2 99 57.6
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 4.6e-22 108.2 106 55.7
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 6.0e-22 107.8 96 60.4
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 6.0e-22 107.8 96 60.4
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 3.9e-21 105.1 122 45.9
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 1.1e-20 103.6 71 73.2
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 1.1e-20 103.6 98 56.1
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 3.3e-20 102.1 101 54.5
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 9.6e-20 100.5 98 57.1
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.3e-19 100.1 98 56.1
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 1.4e-18 96.7 84 58.3
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 1.4e-18 96.7 84 58.3
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 2.4e-18 95.9 90 57.8
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 3.1e-18 95.5 98 54.1
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 4.0e-18 95.1 108 43.5
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 9.0e-18 94.0 102 51.0
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.0e-17 92.8 113 48.7
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 7.6e-17 90.9 84 61.9
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 9.9e-17 90.5 83 61.4
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 9.9e-17 90.5 83 61.4
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 1.3e-16 90.1 83 61.4
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 4.6e-14 81.6 87 56.3
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.0e-13 80.5 80 58.8
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 1.3e-13 80.1 100 43.0
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.9e-12 76.3 78 56.4
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 2.1e-11 72.8 74 52.7
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 4.8e-11 71.6 96 41.7
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 1.2e-09 67.0 80 42.5
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 5.8e-09 64.7 66 56.1
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 3.2e-07 58.9 53 62.3


User provided reference genes

Program Settings