Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 6.6e-154 547.4 281 100.0
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.1e-148 528.1 281 95.4
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.6e-147 526.2 279 96.1
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 2.1e-147 525.8 281 95.0
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.8e-130 469.5 282 85.5
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 6.7e-130 467.6 282 84.4
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 1.1e-116 423.7 281 75.8
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.1e-113 413.7 280 74.3
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 5.3e-111 404.8 287 72.1
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 6.9e-111 404.4 280 73.2
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 4.5e-110 401.7 281 73.3
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 8.5e-109 397.5 281 71.5
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 1.1e-108 397.1 281 70.5
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 1.1e-108 397.1 283 71.7
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 4.2e-108 395.2 286 71.3
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.8e-106 389.8 284 70.4
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 1.6e-104 383.3 280 68.9
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 6.3e-104 381.3 280 69.6
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 1.1e-103 380.6 280 70.7
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 9.1e-103 377.5 280 68.9
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 1.5e-102 376.7 280 69.3
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 6.5e-101 371.3 280 67.9
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 1.1e-100 370.5 267 72.3
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.4e-100 370.2 263 72.2
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 4.2e-100 368.6 282 69.1
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 1.6e-99 366.7 250 74.4
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 2.1e-99 366.3 267 71.5
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 6.1e-99 364.8 268 70.9
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 1.4e-98 363.6 280 68.9
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 2.3e-98 362.8 283 68.6
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 2.3e-98 362.8 284 69.4
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 8.8e-98 360.9 278 67.3
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 1.5e-97 360.1 284 68.3
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 7.4e-97 357.8 271 67.5
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 2.8e-96 355.9 265 70.9
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.4e-95 353.6 279 67.0
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 1.4e-95 353.6 267 68.2
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 4.1e-95 352.1 244 73.0
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.5e-94 350.1 260 70.0
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 2.6e-94 349.4 250 69.6
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 5.9e-94 348.2 284 66.2
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 1.3e-93 347.1 237 72.2
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 1.7e-93 346.7 283 65.7
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 6.5e-93 344.7 284 65.5
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 8.5e-93 344.4 264 66.7
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 1.9e-92 343.2 247 71.3
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 5.5e-92 341.7 243 70.0
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 5.5e-92 341.7 230 73.5
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 1.2e-91 340.5 373 53.6
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.6e-91 340.1 224 74.1
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 2.1e-91 339.7 233 71.7
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 2.7e-91 339.3 233 72.1
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 4.7e-91 338.6 264 65.2
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 1.0e-90 337.4 223 74.0
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 1.4e-90 337.0 234 72.2
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 2.3e-90 336.3 230 74.8
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 6.7e-90 334.7 252 68.3
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.1e-89 334.0 226 74.8
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 1.5e-89 333.6 242 71.5
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 4.4e-89 332.0 288 62.2
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 7.4e-89 331.3 254 68.9
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.4e-87 327.0 274 63.9
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 1.8e-87 326.6 243 70.0
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 3.1e-87 325.9 273 62.3
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 2.6e-86 322.8 245 66.5
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 2.6e-86 322.8 257 65.0
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 7.7e-86 321.2 249 66.3
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.0e-85 320.9 264 62.1
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.7e-85 320.1 230 69.6
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 8.5e-85 317.8 227 69.6
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 7.2e-84 314.7 247 63.6
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 9.4e-84 314.3 300 58.0
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 6.1e-83 311.6 244 66.8
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 3.3e-81 305.8 231 70.1
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 9.7e-81 304.3 249 63.9
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 2.2e-80 303.1 243 61.7
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 4.8e-80 302.0 192 76.0
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 1.6e-78 297.0 183 80.3
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 2.7e-78 296.2 246 65.0
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 1.7e-77 293.5 279 58.1
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 2.2e-72 276.6 197 69.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.7e-72 275.8 249 61.4
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 8.6e-69 264.6 242 57.4
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 5.5e-68 261.9 233 58.4
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 1.6e-67 260.4 221 64.7
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 8.9e-66 254.6 201 69.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 8.3e-64 248.1 181 66.9
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 1.6e-62 243.8 248 51.6
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 1.6e-62 243.8 237 53.6
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 2.7e-62 243.0 420 40.7
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 2.9e-61 239.6 267 51.3
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 5.6e-60 235.3 192 63.5
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 4.7e-59 232.3 196 61.7
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 5.2e-58 228.8 146 78.1
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 9.8e-57 224.6 152 74.3
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 2.4e-55 219.9 259 45.6
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.2e-49 201.1 153 65.4
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 7.8e-46 188.3 150 62.0
FAN09G2218 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.1e-39 165.2 90 93.3
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 6.6e-37 158.7 178 52.2
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 4.9e-32 142.5 145 46.2
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 1.7e-29 134.0 94 67.0
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 2.8e-27 126.7 88 76.1
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 4.0e-26 122.9 273 34.1
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 5.6e-20 102.4 62 80.6
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 2.1e-19 100.5 203 35.0
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.0e-13 81.6 62 71.0
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.9e-13 79.7 40 95.0
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 1.1e-12 78.2 41 90.2
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 4.8e-11 72.8 113 38.1
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 9.0e-10 68.6 222 30.6
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 7.6e-09 65.5 234 29.9
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 7.6e-09 65.5 234 29.9
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 1.3e-08 64.7 223 29.6
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 1.7e-08 64.3 222 29.7
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 1.7e-08 64.3 173 34.1
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 1.7e-08 64.3 222 29.7
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 6.4e-08 62.4 234 29.5
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 3.2e-07 60.1 160 30.6
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 4.2e-07 59.7 218 29.4
QL05p084699 Quercus lobata HOM05D007122 ORTHO05D008918 5.5e-07 59.3 53 52.8
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 7.1e-07 58.9 218 28.9
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 7.1e-07 58.9 247 25.9
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 9.3e-07 58.5 231 28.1
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 9.3e-07 58.5 218 27.5
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 1.6e-06 57.8 218 28.9
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 1.6e-06 57.8 245 24.9
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 2.1e-06 57.4 214 28.5
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 2.1e-06 57.4 220 27.7
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 2.1e-06 57.4 218 27.1
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 2.7e-06 57.0 218 27.5
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 4.6e-06 56.2 220 26.4
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 6.0e-06 55.8 262 26.0
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 7.9e-06 55.5 236 26.3


User provided reference genes

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