Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 3.0e-124 448.7 263 100.0
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.2e-86 321.2 275 76.4
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 3.0e-84 315.8 280 76.1
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.5e-83 311.2 278 75.2
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 4.5e-80 302.0 274 74.1
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 2.8e-74 282.7 279 61.3
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 4.2e-70 268.9 278 58.3
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 1.0e-55 221.1 228 57.0
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 1.6e-53 213.8 221 52.9
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 2.1e-53 213.4 241 53.9
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.1e-53 213.4 178 69.1
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 6.8e-52 208.4 234 55.1
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 1.5e-51 207.2 223 55.6
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 2.9e-50 203.0 236 50.8
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 4.9e-50 202.2 223 54.7
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 9.2e-49 198.0 221 53.8
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 2.7e-48 196.4 229 51.5
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 2.7e-48 196.4 225 51.6
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 6.0e-48 195.3 229 52.4
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 1.7e-47 193.7 225 48.9
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 2.3e-47 193.4 225 51.6
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 5.0e-47 192.2 214 55.1
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 6.6e-47 191.8 220 54.1
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 8.6e-47 191.4 209 53.6
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 8.6e-47 191.4 226 50.4
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 1.9e-46 190.3 158 62.7
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 2.5e-46 189.9 214 53.3
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 2.5e-46 189.9 119 73.9
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 3.3e-46 189.5 235 49.4
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 4.3e-46 189.1 221 50.7
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 5.6e-46 188.7 147 65.3
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 7.3e-46 188.3 217 51.2
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 1.2e-45 187.6 221 47.5
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 1.2e-45 187.6 212 48.1
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.1e-45 186.8 221 49.3
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 2.1e-45 186.8 208 52.4
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 2.8e-45 186.4 217 52.5
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 1.4e-44 184.1 233 53.2
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 1.8e-44 183.7 225 51.1
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 1.8e-44 183.7 234 48.7
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 2.3e-44 183.3 221 48.0
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 4.0e-44 182.6 215 53.5
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 5.2e-44 182.2 216 49.1
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 5.2e-44 182.2 229 52.4
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 1.2e-43 181.0 224 49.6
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 1.5e-43 180.6 132 65.2
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 4.4e-43 179.1 183 55.7
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 4.4e-43 179.1 224 52.2
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 5.8e-43 178.7 224 51.3
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 5.8e-43 178.7 224 51.3
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 5.8e-43 178.7 224 51.3
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 9.9e-43 177.9 222 50.9
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 9.9e-43 177.9 133 63.9
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 9.9e-43 177.9 224 53.1
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 1.3e-42 177.6 206 52.4
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 2.2e-42 176.8 197 54.3
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 2.2e-42 176.8 127 67.7
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 3.7e-42 176.0 120 71.7
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 8.3e-42 174.9 126 69.8
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 1.1e-41 174.5 175 56.6
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 1.4e-41 174.1 218 52.8
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 1.4e-41 174.1 125 70.4
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 1.9e-41 173.7 222 49.1
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 1.9e-41 173.7 227 44.5
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 2.4e-41 173.3 136 64.0
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.2e-41 172.9 216 50.9
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 1.2e-40 171.0 206 52.4
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 1.2e-40 171.0 135 63.7
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.6e-40 170.6 225 48.9
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 2.7e-40 169.9 214 49.5
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 6.0e-40 168.7 230 49.6
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 6.0e-40 168.7 223 51.1
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 7.8e-40 168.3 120 66.7
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 1.0e-39 167.9 212 48.6
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 1.7e-39 167.2 113 69.9
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.3e-39 166.8 180 60.6
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 4.7e-37 159.1 154 64.3
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 6.8e-36 155.2 129 59.7
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 9.9e-35 151.4 231 43.7
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 1.1e-33 147.9 214 46.7
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 1.4e-33 147.5 118 62.7
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 1.9e-33 147.1 137 57.7
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 6.0e-32 142.1 231 41.1
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.7e-31 140.6 154 59.7
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 2.3e-31 140.2 133 53.4
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 1.6e-29 134.0 228 39.9
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.1e-29 133.7 114 57.0
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 2.1e-29 133.7 233 39.9
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 2.4e-28 130.2 121 51.2
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 5.8e-27 125.6 101 62.4
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 3.2e-25 119.8 224 35.7
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.2e-24 117.9 117 47.9
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 2.7e-24 116.7 225 36.9
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 5.1e-23 112.5 112 52.7
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 6.6e-23 112.1 135 46.7
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 6.2e-21 105.5 122 45.9
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 5.3e-20 102.4 111 46.8
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 7.6e-11 72.0 150 41.3
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 7.1e-09 65.5 30 93.3
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 2.7e-08 63.5 49 59.2


User provided reference genes

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