Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.0e-91 340.1 177 100.0
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.7e-83 312.8 177 93.8
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 8.6e-83 310.5 177 93.2
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.1e-82 310.1 176 93.2
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.4e-79 298.1 206 81.1
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 8.3e-78 293.9 171 89.5
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 8.6e-75 283.9 173 83.8
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 7.3e-74 280.8 175 81.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 3.5e-68 261.9 160 84.4
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 1.0e-67 260.4 167 81.4
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 8.6e-67 257.3 167 80.8
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.5e-66 256.5 158 81.6
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 3.3e-66 255.4 158 81.0
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 9.5e-66 253.8 173 76.3
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.6e-65 253.1 160 80.6
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.8e-65 252.3 161 78.9
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.4e-64 250.0 171 76.0
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 6.8e-64 247.7 161 78.3
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 8.9e-64 247.3 158 77.2
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.2e-63 246.9 158 78.5
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.2e-63 246.9 157 79.0
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.2e-63 246.9 161 78.3
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.2e-63 246.9 161 78.3
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.5e-63 246.5 150 84.0
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.0e-63 246.1 168 75.0
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.6e-63 245.7 160 75.0
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 3.4e-63 245.4 159 76.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 3.4e-63 245.4 159 77.4
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 4.4e-63 245.0 167 73.7
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 4.9e-62 241.5 160 77.5
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 6.4e-62 241.1 164 78.7
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 1.1e-61 240.4 158 77.2
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.1e-61 240.4 175 72.0
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.4e-61 240.0 158 77.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 4.1e-61 238.4 167 74.3
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.1e-61 237.7 149 85.9
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 2.1e-60 236.1 157 76.4
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 7.8e-60 234.2 146 81.5
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 7.8e-60 234.2 170 71.8
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 2.3e-59 232.6 170 71.2
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 2.3e-59 232.6 157 77.7
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 3.0e-59 232.3 173 71.1
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.5e-58 229.9 165 72.1
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 9.5e-58 227.3 140 84.3
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 9.5e-58 227.3 165 73.9
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.6e-57 226.5 151 76.2
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 6.2e-57 224.6 169 69.8
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 8.1e-57 224.2 148 79.1
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.4e-56 223.4 140 81.4
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.8e-56 223.0 141 81.6
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.8e-56 223.0 158 74.1
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 2.3e-56 222.6 151 75.5
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.0e-56 221.9 154 73.4
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.0e-56 221.9 149 76.5
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 4.0e-56 221.9 155 75.5
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 5.2e-56 221.5 154 72.1
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.2e-56 221.5 149 74.5
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 8.9e-56 220.7 166 71.1
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 8.9e-56 220.7 141 79.4
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.2e-55 220.3 166 71.1
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.2e-55 220.3 161 70.8
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 3.4e-55 218.8 141 80.1
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.4e-55 218.8 152 75.7
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 4.4e-55 218.4 154 72.7
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 5.8e-55 218.0 163 69.9
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 5.8e-55 218.0 141 78.0
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 7.6e-55 217.6 141 79.4
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 9.9e-55 217.2 159 70.4
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 1.3e-54 216.9 151 72.8
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.3e-54 216.9 192 63.5
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 3.7e-54 215.3 145 74.5
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 3.7e-54 215.3 157 68.8
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 4.9e-54 214.9 142 76.1
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 8.3e-54 214.2 154 71.4
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.1e-53 213.8 153 71.2
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.4e-53 211.5 166 68.1
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 7.1e-53 211.1 148 72.3
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 9.2e-53 210.7 164 69.5
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.2e-52 210.3 145 73.1
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-52 209.9 158 70.3
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 2.1e-52 209.5 161 68.3
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 4.6e-52 208.4 158 70.3
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 4.6e-52 208.4 148 73.0
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 6.0e-52 208.0 166 66.9
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 7.8e-52 207.6 154 70.1
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.3e-51 206.1 167 67.7
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 3.9e-51 205.3 146 73.3
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 5.1e-51 204.9 161 68.9
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 5.1e-51 204.9 161 68.9
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 8.6e-51 204.1 131 82.4
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.5e-50 203.4 146 71.9
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-50 203.4 146 71.9
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.9e-50 203.0 153 70.6
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.9e-50 203.0 161 68.3
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.5e-50 202.6 154 70.1
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.5e-50 202.6 146 74.0
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 3.3e-50 202.2 146 71.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.8e-49 199.1 124 81.5
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.0e-48 195.3 147 70.1
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 2.0e-47 193.0 165 62.4
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 2.0e-47 193.0 136 72.8
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.3e-46 190.3 158 63.3
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.9e-46 188.3 160 61.2
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 6.4e-46 188.0 131 72.5
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 1.1e-45 187.2 174 58.6
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 2.7e-44 182.6 103 88.3
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.3e-43 180.3 128 74.2
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 5.1e-43 178.3 128 73.4
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 2.5e-42 176.0 124 75.8
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 3.3e-42 175.6 107 82.2
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.3e-41 173.7 105 81.0
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 6.9e-40 167.9 103 85.4
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 1.2e-39 167.2 108 78.7
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 3.8e-38 162.2 119 68.1
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 6.4e-38 161.4 105 78.1
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 8.4e-38 161.0 108 79.6
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.1e-36 156.4 101 79.2
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 4.3e-34 148.7 118 66.1
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.8e-33 145.2 141 56.0
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.4e-32 143.7 103 71.8
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.0e-32 142.1 106 65.1
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 2.6e-31 139.4 159 46.5
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 7.6e-31 137.9 84 81.0
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 7.6e-31 137.9 96 77.1
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 4.9e-30 135.2 82 84.1
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.1e-20 103.2 107 55.1
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.8e-19 100.1 128 46.1
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.9e-18 96.7 128 41.4
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 4.3e-18 95.5 116 49.1
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.8e-17 92.8 57 80.7
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 3.1e-16 89.4 124 38.7
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.2e-15 87.4 54 75.9
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 5.5e-13 78.6 53 71.7
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 9.7e-10 67.8 47 72.3
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 4.8e-09 65.5 46 71.7
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 8.2e-09 64.7 48 68.8
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 8.2e-09 64.7 48 68.8
CsaV3_3G034220 Cucumis sativus L. HOM05D000289 ORTHO05D000208 3.4e-07 59.3 123 34.1
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 2.9e-06 56.2 39 79.5
Sed0025870 Sechium edule HOM05D000289 ORTHO05D000208 2.9e-06 56.2 123 32.5
ClCG10G021750 Citrullus lanatus HOM05D000289 ORTHO05D000208 6.5e-06 55.1 134 33.6
Sed0027484 Sechium edule HOM05D000289 ORTHO05D000208 6.5e-06 55.1 123 33.3
Glyma.08G224900 Glycine max HOM05D005569 ORTHO05D007052 8.5e-06 54.7 30 73.3


User provided reference genes

Program Settings