Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 6.0e-209 730.7 398 100.0
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 4.3e-191 671.4 407 88.9
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 8.1e-190 667.2 407 88.5
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.1e-189 665.2 407 88.0
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 4.9e-187 657.9 429 83.9
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 5.5e-162 574.7 413 79.7
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 3.1e-157 558.9 406 77.1
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 1.0e-144 517.3 398 71.1
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 3.5e-140 502.3 407 66.8
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 4.5e-140 501.9 413 66.6
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 1.1e-138 497.3 393 70.0
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 6.7e-136 488.0 396 67.7
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 8.8e-136 487.6 390 67.9
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 2.2e-134 483.0 397 67.5
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 4.5e-132 475.3 414 63.8
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 5.0e-131 471.9 409 62.6
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 6.5e-131 471.5 400 67.2
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 1.1e-130 470.7 393 67.2
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 6.1e-129 464.9 364 68.1
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 2.3e-128 463.0 398 63.3
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 3.0e-128 462.6 400 62.8
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 1.2e-127 460.7 393 64.4
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 2.6e-127 459.5 386 64.2
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 7.5e-127 458.0 410 62.4
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 9.7e-127 457.6 410 61.0
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 2.8e-126 456.1 407 61.9
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 3.7e-126 455.7 408 61.3
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 1.8e-125 453.4 356 66.3
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 2.4e-125 453.0 421 61.0
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 4.1e-125 452.2 392 64.0
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 5.3e-125 451.8 406 60.8
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 7.0e-125 451.4 406 62.3
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 9.1e-125 451.1 389 62.0
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 1.2e-124 450.7 408 59.8
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 2.0e-124 449.9 359 66.3
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 2.0e-124 449.9 364 66.5
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 5.9e-124 448.4 330 70.0
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 5.9e-124 448.4 361 66.2
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.0e-123 447.6 399 61.7
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 1.0e-123 447.6 340 68.2
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 1.5e-122 443.7 405 60.5
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 4.2e-122 442.2 346 67.6
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 2.1e-121 439.9 422 58.1
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 1.0e-120 437.6 348 67.2
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.8e-120 436.8 391 60.9
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 8.8e-120 434.5 418 60.0
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 8.8e-120 434.5 352 66.5
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 6.3e-118 428.3 402 59.2
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 6.3e-118 428.3 369 63.1
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.4e-117 427.2 389 59.9
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 1.4e-117 427.2 397 59.4
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 1.4e-117 427.2 369 62.9
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 2.7e-116 422.9 363 63.6
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 7.7e-116 421.4 332 67.2
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 1.0e-115 421.0 369 62.3
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 1.3e-115 420.6 341 64.5
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 2.3e-115 419.9 402 59.2
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 6.6e-115 418.3 345 64.3
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 4.7e-113 412.1 332 66.3
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 1.4e-112 410.6 408 57.4
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 1.4e-112 410.6 346 63.3
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 4.0e-112 409.1 332 66.9
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 9.2e-109 397.9 346 62.1
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 7.3e-106 388.3 358 60.3
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 1.8e-104 383.6 332 59.0
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 9.8e-103 377.9 391 55.8
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 1.9e-101 373.6 273 71.1
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 2.3e-99 366.7 371 53.1
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 5.0e-99 365.5 305 64.3
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 8.6e-99 364.8 340 59.1
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 1.2e-97 360.9 341 58.9
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 4.4e-95 352.4 389 53.5
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 5.8e-95 352.1 410 51.7
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.4e-93 347.4 298 67.1
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 7.1e-93 345.1 323 62.5
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.1e-88 331.3 244 70.5
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 1.2e-87 327.8 339 52.2
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 3.5e-84 316.2 463 44.1
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 6.0e-84 315.5 216 73.6
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 1.3e-83 314.3 372 50.3
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 1.7e-83 313.9 314 54.8
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 2.5e-82 310.1 271 64.2
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 4.3e-82 309.3 366 49.7
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 2.0e-79 300.4 352 51.1
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 6.2e-73 278.9 186 78.5
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 2.4e-72 276.9 200 70.5
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 2.1e-68 263.8 186 73.1
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 8.7e-67 258.5 324 46.0
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 4.5e-63 246.1 370 42.7
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 1.4e-61 241.1 223 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.8e-59 234.2 385 40.3
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 9.0e-56 221.9 350 38.9
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 1.3e-49 201.4 218 53.7
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 2.9e-46 190.3 137 70.8
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 1.6e-36 157.9 118 70.3
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 2.3e-35 154.1 104 75.0
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 3.0e-35 153.7 124 64.5
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 1.8e-32 144.4 112 66.1
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 5.5e-29 132.9 99 68.7
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 2.1e-28 131.0 344 31.7
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.0e-27 128.6 87 74.7
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 1.2e-23 115.2 104 53.8
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 1.5e-21 108.2 351 27.4
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.1e-18 98.6 87 57.5
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 2.8e-17 94.0 366 26.5
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 1.1e-16 92.0 75 68.0
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 3.7e-09 67.0 133 37.6
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 6.3e-09 66.2 223 26.0
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 8.3e-09 65.9 55 58.2
Mapoly0157s0006 Marchantia polymorpha HOM05D001509 ORTHO05D001361 5.0e-06 56.6 198 21.7
Oeu060057.1 Olea europaea HOM05D001509 ORTHO05D001361 8.5e-06 55.8 248 28.2


User provided reference genes

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