Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 2.9e-76 288.5 145 100.0
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 5.8e-69 264.2 145 89.7
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.8e-69 264.2 145 89.7
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.8e-69 264.2 145 89.7
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.0e-65 251.1 145 86.9
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 2.1e-58 229.2 127 89.8
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 4.4e-53 211.5 148 73.6
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 3.5e-50 201.8 149 67.8
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 1.7e-44 183.0 145 63.4
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 2.9e-44 182.2 145 63.4
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 8.4e-44 180.6 147 65.3
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 2.1e-42 176.0 144 61.1
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 3.0e-41 172.2 142 59.9
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 3.9e-41 171.8 143 60.1
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 3.9e-41 171.8 142 59.9
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 1.1e-40 170.2 142 59.2
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 9.6e-40 167.2 144 61.1
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 1.6e-39 166.4 145 57.2
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 3.6e-39 165.2 145 56.6
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 4.8e-39 164.9 144 57.6
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 6.2e-39 164.5 145 60.0
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 8.1e-39 164.1 141 58.9
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 1.4e-38 163.3 140 57.1
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 3.1e-38 162.2 143 57.3
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 6.9e-38 161.0 142 57.7
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 2.6e-37 159.1 144 55.6
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 2.6e-37 159.1 144 55.6
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 4.5e-37 158.3 121 62.8
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 4.5e-37 158.3 143 57.3
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.2e-36 156.0 147 56.5
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 3.8e-36 155.2 121 62.8
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 4.9e-36 154.8 146 56.8
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 4.9e-36 154.8 142 53.5
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 1.4e-35 153.3 156 50.0
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 1.4e-35 153.3 143 55.2
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 7.1e-35 151.0 144 54.2
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 9.3e-35 150.6 121 58.7
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 2.1e-34 149.4 116 58.6
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.1e-34 149.4 147 53.1
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 2.1e-34 149.4 147 55.1
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 1.3e-33 146.7 136 56.6
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 1.8e-33 146.4 144 54.2
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 6.7e-33 144.4 138 53.6
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 2.5e-32 142.5 144 52.1
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 4.3e-32 141.7 144 53.5
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 7.4e-32 141.0 144 50.0
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 1.8e-30 136.3 120 55.0
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 3.1e-30 135.6 144 48.6
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 5.3e-30 134.8 142 48.6
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 6.9e-30 134.4 139 51.8
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 2.0e-29 132.9 146 48.6
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 4.5e-29 131.7 140 50.0
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 4.9e-28 128.3 142 47.9
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 6.4e-28 127.9 143 46.9
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 6.4e-28 127.9 136 52.9
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 8.4e-28 127.5 140 47.1
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 1.1e-27 127.1 143 46.2
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 2.4e-27 125.9 128 50.8
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 3.2e-27 125.6 138 52.9
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 3.2e-27 125.6 140 47.1
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 3.2e-27 125.6 105 61.0
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 7.1e-27 124.4 143 46.9
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 1.6e-26 123.2 143 44.8
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 3.5e-26 122.1 138 46.4
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 3.5e-26 122.1 142 45.1
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 4.6e-26 121.7 100 56.0
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 4.6e-26 121.7 138 46.4
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 4.6e-26 121.7 154 48.1
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 7.9e-26 120.9 119 58.0
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 7.9e-26 120.9 135 51.1
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 1.0e-25 120.6 144 47.9
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 1.3e-25 120.2 144 47.9
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 1.3e-25 120.2 143 45.5
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 1.3e-25 120.2 154 48.7
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 1.3e-25 120.2 136 51.5
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 5.1e-25 118.2 118 53.4
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 6.7e-25 117.9 98 57.1
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 8.7e-25 117.5 92 63.0
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.1e-24 117.1 135 47.4
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.1e-24 117.1 99 65.7
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 1.5e-24 116.7 134 50.7
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 9.6e-24 114.0 144 44.4
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 2.1e-23 112.8 144 43.8
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 3.7e-23 112.1 155 42.6
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 3.7e-23 112.1 155 42.6
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 8.2e-23 110.9 121 52.1
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 5.3e-22 108.2 80 67.5
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.5e-21 106.7 140 46.4
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 4.5e-21 105.1 150 42.7
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 1.7e-20 103.2 114 47.4
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.7e-20 103.2 150 40.7
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 1.1e-19 100.5 139 45.3
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 9.3e-19 97.4 144 39.6
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 2.7e-18 95.9 115 46.1
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 3.0e-17 92.4 95 50.5
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 1.5e-16 90.1 115 45.2
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 9.7e-16 87.4 113 47.8
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 1.3e-15 87.0 118 41.5
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 1.3e-15 87.0 119 43.7
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 6.3e-15 84.7 65 56.9
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 1.2e-13 80.5 157 33.1
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 1.5e-13 80.1 100 40.0
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 2.5e-11 72.8 97 43.3
SEGI_24559 Sequoiadendron giganteum HOM05D007364 ORTHO05D009275 1.2e-10 70.5 105 39.0
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.4e-09 67.0 62 51.6
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.8e-09 66.6 68 48.5
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 2.2e-07 59.7 114 30.7
SalBow7G1183 Salvia bowleyana HOM05D003223 ORTHO05D004865 6.3e-07 58.2 104 39.4


User provided reference genes

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