Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0148781 Rosa chinensis HOM05D000309 ORTHO05D000271 2.9e-16 87.4 44 100.0
FAN14G0744 Fragaria x ananassa HOM05D000309 ORTHO05D000271 2.0e-12 74.7 39 92.3
FvH4_6g36510 Fragaria vesca HOM05D000309 ORTHO05D000271 2.2e-11 71.2 37 91.9
RcHm_v2.0_Chr2g0148821 Rosa chinensis HOM05D000309 ORTHO05D000271 2.2e-11 71.2 37 91.9
GSVIVG01029524001 Vitis vinifera HOM05D000309 ORTHO05D000271 4.8e-11 70.1 40 82.5
FAN07G1709 Fragaria x ananassa HOM05D000309 ORTHO05D000271 6.3e-11 69.7 43 76.7
FAN12G0421 Fragaria x ananassa HOM05D000309 ORTHO05D000271 6.3e-11 69.7 43 76.7
FAN17G1622 Fragaria x ananassa HOM05D000309 ORTHO05D000271 6.3e-11 69.7 43 76.7
Potri.007G002200 Populus trichocarpa HOM05D000309 ORTHO05D000271 8.3e-11 69.3 39 84.6
MELO3C024270.2 Cucumis melo HOM05D000309 ORTHO05D000271 1.1e-10 68.9 39 84.6
CsaV3_7G033590 Cucumis sativus L. HOM05D000309 ORTHO05D000271 1.1e-10 68.9 39 84.6
TAR383G0917 Trochodendron aralioides HOM05D000309 ORTHO05D000271 1.4e-10 68.6 37 89.2
FAN02G3763 Fragaria x ananassa HOM05D000309 ORTHO05D000271 1.8e-10 68.2 43 79.1
MD00G1220900 Malus domestica HOM05D000309 ORTHO05D000271 1.8e-10 68.2 37 86.5
GSVIVG01029525001 Vitis vinifera HOM05D000309 ORTHO05D000271 1.8e-10 68.2 39 82.1
Sabra07G0001600 Salix brachista HOM05D000309 ORTHO05D000271 2.4e-10 67.8 39 82.1
vmacro09577 Vaccinium macrocarpon HOM05D000309 ORTHO05D000271 2.4e-10 67.8 40 77.5
GSVIVG01015993001 Vitis vinifera HOM05D000309 ORTHO05D005508 3.1e-10 67.4 40 80.0
Prupe.3G026100 Prunus persica HOM05D000309 ORTHO05D000271 5.4e-10 66.6 37 86.5
Thecc.06G053400 Theobroma cacao HOM05D000309 ORTHO05D000271 5.4e-10 66.6 39 82.1
CiPaw.15G161500 Carya illinoinensis HOM05D000309 ORTHO05D000271 7.0e-10 66.2 39 79.5
SalBow6G0376 Salvia bowleyana HOM05D000309 ORTHO05D000271 7.0e-10 66.2 39 79.5
CiPaw.01G094900 Carya illinoinensis HOM05D000309 ORTHO05D000271 9.1e-10 65.9 37 81.1
ECA232G3294 Erigeron canadensis HOM05D000309 ORTHO05D000271 9.1e-10 65.9 37 83.8
MD17G1246600 Malus domestica HOM05D000309 ORTHO05D000271 9.1e-10 65.9 37 83.8
Nn8g41141 Nelumbo nucifera HOM05D000309 ORTHO05D000271 9.1e-10 65.9 37 83.8
TWI63G1104 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 9.1e-10 65.9 37 81.1
GSVIVG01029527001 Vitis vinifera HOM05D000309 ORTHO05D000271 9.1e-10 65.9 37 83.8
Atru.chr6.1466 Acer truncatum HOM05D000309 ORTHO05D000271 1.2e-09 65.5 37 81.1
Cpa.g.sc91.50 Carica papaya HOM05D000309 ORTHO05D000271 1.2e-09 65.5 37 83.8
Hma1.2p1_1704F.1_g298320 Hydrangea macrophylla HOM05D000309 ORTHO05D000271 1.2e-09 65.5 39 79.5
Manes.02G223000 Manihot esculenta HOM05D000309 ORTHO05D000271 1.2e-09 65.5 39 76.9
Prupe.1G063400 Prunus persica HOM05D000309 ORTHO05D000271 1.2e-09 65.5 37 83.8
QL11p008104 Quercus lobata HOM05D000309 ORTHO05D000271 1.2e-09 65.5 37 81.1
Hund26801 Selenicereus undatus HOM05D000309 ORTHO05D000271 1.2e-09 65.5 39 76.9
SGA_v2.0_scaffold14G06983 Striga asiatica HOM05D000309 ORTHO05D000271 1.2e-09 65.5 39 76.9
SGA_v2.0_scaffold31G12713 Striga asiatica HOM05D000309 ORTHO05D000271 1.6e-09 65.1 39 74.4
GSVIVG01032285001 Vitis vinifera HOM05D000309 ORTHO05D000271 1.6e-09 65.1 37 81.1
COL.COLO4_07471 Corchorus olitorius HOM05D000309 ORTHO05D000271 2.0e-09 64.7 38 81.6
Dinv12616 Davidia involucrata HOM05D000309 ORTHO05D000271 2.0e-09 64.7 39 76.9
Dinv26481 Davidia involucrata HOM05D000309 ORTHO05D000271 2.0e-09 64.7 39 79.5
TAR626G0420 Trochodendron aralioides HOM05D000309 ORTHO05D000271 2.0e-09 64.7 37 83.8
FvH4_4g05990 Fragaria vesca HOM05D000309 ORTHO05D000271 2.7e-09 64.3 37 81.1
Rhsim03G0270700 Rhododendron simsii HOM05D000309 ORTHO05D000271 2.7e-09 64.3 42 73.8
TWI75G1227 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 2.7e-09 64.3 39 76.9
GSVIVG01029514001 Vitis vinifera HOM05D000309 ORTHO05D000271 2.7e-09 64.3 37 81.1
A07p08970 Brassica napus HOM05D000309 ORTHO05D000271 3.5e-09 63.9 39 74.4
BraA07t28687Z Brassica rapa HOM05D000309 ORTHO05D000271 3.5e-09 63.9 39 74.4
CSS0028011 Camellia sinensis var. sinensis HOM05D000309 ORTHO05D000271 3.5e-09 63.9 37 78.4
CSS0039525 Camellia sinensis var. sinensis HOM05D000309 ORTHO05D000271 3.5e-09 63.9 39 76.9
Lj2g0015183 Lotus japonicus HOM05D000309 ORTHO05D000271 3.5e-09 63.9 37 78.4
Nn4g24323 Nelumbo nucifera HOM05D000309 ORTHO05D000271 3.5e-09 63.9 39 74.4
Rhsim03G0270500 Rhododendron simsii HOM05D000309 ORTHO05D000271 3.5e-09 63.9 39 76.9
Sabra18G0122500 Salix brachista HOM05D000309 ORTHO05D000271 3.5e-09 63.9 40 77.5
CANSAT80G0275 Cannabis sativa HOM05D000309 ORTHO05D000271 4.5e-09 63.5 37 78.4
HanXRQChr09g0260661 Helianthus annuus HOM05D000309 ORTHO05D000271 4.5e-09 63.5 37 78.4
Nn2g10230 Nelumbo nucifera HOM05D000309 ORTHO05D000271 4.5e-09 63.5 37 81.1
Nitab4.5_0000299g0280 Nicotiana tabacum HOM05D000309 ORTHO05D000271 4.5e-09 63.5 43 67.4
PSO170G2521 Papaver somniferum HOM05D000309 ORTHO05D000271 4.5e-09 63.5 37 75.7
QL05p086035 Quercus lobata HOM05D000309 ORTHO05D000271 4.5e-09 63.5 40 77.5
Sabra18G0125800 Salix brachista HOM05D000309 ORTHO05D000271 4.5e-09 63.5 38 81.6
Thecc.08G171900 Theobroma cacao HOM05D000309 ORTHO05D000271 4.5e-09 63.5 37 78.4
AUR62027296 Chenopodium quinoa HOM05D000309 ORTHO05D000271 5.9e-09 63.2 39 79.5
Ciclev10032410m.g Citrus clementina HOM05D000309 ORTHO05D000271 5.9e-09 63.2 39 74.4
MD16G1237000 Malus domestica HOM05D000309 ORTHO05D000271 5.9e-09 63.2 37 78.4
MD17G1246000 Malus domestica HOM05D000309 ORTHO05D000271 5.9e-09 63.2 37 81.1
Oeu000963.2 Olea europaea HOM05D000309 ORTHO05D000271 5.9e-09 63.2 37 75.7
Potri.018G148800 Populus trichocarpa HOM05D000309 ORTHO05D000271 5.9e-09 63.2 39 79.5
RcHm_v2.0_Chr4g0397221 Rosa chinensis HOM05D000309 ORTHO05D000271 5.9e-09 63.2 37 78.4
Duzib192G0602 Durio zibethinus HOM05D000309 ORTHO05D000271 7.7e-09 62.8 39 76.9
Gohir.A05G115700 Gossypium hirsutum HOM05D000309 ORTHO05D000271 7.7e-09 62.8 39 76.9
Oeu057448.1 Olea europaea HOM05D000309 ORTHO05D000271 7.7e-09 62.8 39 71.8
Oeu057460.1 Olea europaea HOM05D000309 ORTHO05D000271 7.7e-09 62.8 39 69.2
vmacro20758 Vaccinium macrocarpon HOM05D000309 ORTHO05D000271 7.7e-09 62.8 39 76.9
GSVIVG01029467001 Vitis vinifera HOM05D000309 ORTHO05D005508 7.7e-09 62.8 40 75.0
Cc00_g00030 Coffea canephora HOM05D000309 ORTHO05D000271 1.0e-08 62.4 37 75.7
MD13G1232100 Malus domestica HOM05D000309 ORTHO05D000271 1.0e-08 62.4 37 78.4
Phvul.004G178300 Phaseolus vulgaris HOM05D000309 ORTHO05D000271 1.0e-08 62.4 37 75.7
Sabra18G0125200 Salix brachista HOM05D000309 ORTHO05D000271 1.0e-08 62.4 38 81.6
Sed0009515 Sechium edule HOM05D000309 ORTHO05D000271 1.0e-08 62.4 39 74.4
VMungo0464G1032 Vigna mungo HOM05D000309 ORTHO05D000271 1.0e-08 62.4 37 75.7
BcaC06g35530 Brassica carinata HOM05D000309 ORTHO05D000271 1.3e-08 62.0 37 75.7
Duzib170G1095 Durio zibethinus HOM05D000309 ORTHO05D000271 1.3e-08 62.0 37 78.4
CSS0008081 Camellia sinensis var. sinensis HOM05D000309 ORTHO05D000271 1.7e-08 61.6 37 75.7
Ca_25638_v3 Cicer arietinum L. HOM05D000309 ORTHO05D000271 1.7e-08 61.6 37 73.0
MBI13_g33566_MAGBIO Magnolia biondii HOM05D000309 ORTHO05D000271 1.7e-08 61.6 37 73.0
Nitab4.5_0007750g0010 Nicotiana tabacum HOM05D000309 ORTHO05D000271 1.7e-08 61.6 40 67.5
PSO063G5658 Papaver somniferum HOM05D000309 ORTHO05D000271 1.7e-08 61.6 37 73.0
BraA03t13608Z Brassica rapa HOM05D000309 ORTHO05D000271 2.2e-08 61.2 38 73.7
AUR62022386 Chenopodium quinoa HOM05D000309 ORTHO05D000271 2.2e-08 61.2 39 74.4
Migut.J00843 Erythranthe guttata HOM05D000309 ORTHO05D000271 2.2e-08 61.2 37 75.7
Gohir.A08G015900 Gossypium hirsutum HOM05D000309 ORTHO05D000271 2.2e-08 61.2 37 78.4
Gohir.D04G034566 Gossypium hirsutum HOM05D000309 ORTHO05D000271 2.2e-08 61.2 38 76.3
Gohir.D05G116100 Gossypium hirsutum HOM05D000309 ORTHO05D000271 2.2e-08 61.2 39 74.4
Gohir.D08G026100 Gossypium hirsutum HOM05D000309 ORTHO05D000271 2.2e-08 61.2 37 78.4
Gohir.D10G200450 Gossypium hirsutum HOM05D000309 ORTHO05D000271 2.2e-08 61.2 39 71.8
Gorai.004G022500 Gossypium raimondii HOM05D000309 ORTHO05D000271 2.2e-08 61.2 37 78.4
Gorai.009G120100 Gossypium raimondii HOM05D000309 ORTHO05D000271 2.2e-08 61.2 39 74.4
Sabra06G0060000 Salix brachista HOM05D000309 ORTHO05D000271 2.2e-08 61.2 38 76.3
Glyma.01G001300 Glycine max HOM05D000309 ORTHO05D000271 2.9e-08 60.8 37 73.0
MD17G1182500 Malus domestica HOM05D000309 ORTHO05D000271 2.9e-08 60.8 37 78.4
Sc26g0003100 Simmondsia chinensis HOM05D000309 ORTHO05D000271 3.8e-08 60.5 39 71.8
HPP92_015818 Vanilla planifolia HOM05D000309 ORTHO05D000271 3.8e-08 60.5 37 75.7
EL10Ac5g11880 Beta vulgaris HOM05D000309 ORTHO05D000271 5.0e-08 60.1 37 75.7
Gorai.011G224800 Gossypium raimondii HOM05D000309 ORTHO05D000271 5.0e-08 60.1 39 71.8
Lalb_Chr22g0361651 Lupinus albus HOM05D000309 ORTHO05D000271 5.0e-08 60.1 37 73.0
Medtr5g008810 Medicago truncatula HOM05D000309 ORTHO05D000271 5.0e-08 60.1 37 78.4
QL05p087040 Quercus lobata HOM05D000309 ORTHO05D000271 6.5e-08 59.7 37 75.7
Aqoxy7G02653 Aquilegia oxysepala HOM05D000309 ORTHO05D000271 8.5e-08 59.3 37 78.4
GSVIVG01001724001 Vitis vinifera HOM05D000309 ORTHO05D000271 8.5e-08 59.3 39 66.7
Gohir.D05G042300 Gossypium hirsutum HOM05D000309 ORTHO05D000271 1.1e-07 58.9 39 71.8
Psat1g051480 Pisum sativum HOM05D000309 ORTHO05D000271 1.1e-07 58.9 37 73.0
Potri.006G079300 Populus trichocarpa HOM05D000309 ORTHO05D000271 1.1e-07 58.9 39 71.8
arahy.Tifrunner.gnm1.ann1.FNNX8Q Arachis hypogaea HOM05D000309 ORTHO05D000271 1.5e-07 58.5 37 67.6
arahy.Tifrunner.gnm1.ann1.T5AYFK Arachis hypogaea HOM05D000309 ORTHO05D000271 1.5e-07 58.5 37 67.6
Zm00001eb336350 Zea mays HOM05D000309 ORTHO05D000271 1.5e-07 58.5 37 73.0
ATR0626G349 Amborella trichopoda HOM05D000309 ORTHO05D000271 1.9e-07 58.2 37 67.6
SalBow6G1298 Salvia bowleyana HOM05D000309 ORTHO05D000271 1.9e-07 58.2 37 67.6
Solyc04g070980.4 Solanum lycopersicum HOM05D000309 ORTHO05D000271 1.9e-07 58.2 37 70.3
Sopen04g026930 Solanum pennellii HOM05D000309 ORTHO05D000271 1.9e-07 58.2 37 70.3
AT2G07050 Arabidopsis thaliana HOM05D000309 ORTHO05D000271 2.5e-07 57.8 37 73.0
Thhalv10002412m.g Eutrema salsugineum HOM05D000309 ORTHO05D000271 2.5e-07 57.8 37 73.0
Gorai.011G204500 Gossypium raimondii HOM05D000309 ORTHO05D000271 2.5e-07 57.8 39 69.2
Sp3g25300 Schrenkiella parvula HOM05D000309 ORTHO05D000271 2.5e-07 57.8 37 73.0
Ah.12g058890 Amaranthus hybridus HOM05D000309 ORTHO05D000271 3.2e-07 57.4 39 64.1
Carub.0003s2739 Capsella rubella HOM05D000309 ORTHO05D000271 3.2e-07 57.4 37 73.0
Ciclev10007532m.g Citrus clementina HOM05D000309 ORTHO05D000271 3.2e-07 57.4 39 64.1
Ciclev10010416m.g Citrus clementina HOM05D000309 ORTHO05D000271 3.2e-07 57.4 39 64.1
SMO002G0017 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 3.2e-07 57.4 37 64.9
TWI53G0270 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 3.2e-07 57.4 39 64.1
MSTRG.26516 Avicennia marina HOM05D000309 ORTHO05D000271 4.2e-07 57.0 39 69.2
CiPaw.15G161400 Carya illinoinensis HOM05D000309 ORTHO05D000271 4.2e-07 57.0 39 64.1
Thhalv10003155m.g Eutrema salsugineum HOM05D000309 ORTHO05D000271 4.2e-07 57.0 37 70.3
Manes.02G227300 Manihot esculenta HOM05D000309 ORTHO05D000271 4.2e-07 57.0 37 73.0
Prupe.1G063500 Prunus persica HOM05D000309 ORTHO05D000271 4.2e-07 57.0 37 67.6
PGR044G2300 Punica granatum HOM05D000309 ORTHO05D000271 4.2e-07 57.0 37 73.0
A03p44730 Brassica napus HOM05D000309 ORTHO05D000271 5.5e-07 56.6 38 71.1
C03p55580 Brassica napus HOM05D000309 ORTHO05D000271 5.5e-07 56.6 38 71.1
BolC3t17835H Brassica oleracea HOM05D000309 ORTHO05D000271 5.5e-07 56.6 38 71.1
CSS0024682 Camellia sinensis var. sinensis HOM05D000309 ORTHO05D000271 5.5e-07 56.6 37 67.6
Os11g0189600 Oryza sativa ssp. japonica HOM05D000309 ORTHO05D000271 5.5e-07 56.6 37 67.6
Peaxi162Scf00954g00115 Petunia axillaris HOM05D000309 ORTHO05D000271 5.5e-07 56.6 39 69.2
AL3G44070 Arabidopsis lyrata HOM05D000309 ORTHO05D000271 7.2e-07 56.2 37 70.3
CDE05G2327 Ceratophyllum demersum HOM05D000309 ORTHO05D002783 7.2e-07 56.2 37 73.0
Dinv12615 Davidia involucrata HOM05D000309 ORTHO05D000271 7.2e-07 56.2 37 70.3
Os02g0139500 Oryza sativa ssp. japonica HOM05D000309 ORTHO05D000271 7.2e-07 56.2 37 70.3
Zm00001eb208140 Zea mays HOM05D000309 ORTHO05D000271 7.2e-07 56.2 37 67.6
Haze_19094 Corylus avellana HOM05D000309 ORTHO05D000271 9.4e-07 55.8 39 61.5
Gorai.012G039000 Gossypium raimondii HOM05D000309 ORTHO05D000271 9.4e-07 55.8 38 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4473 Anthoceros agrestis HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 59.5
MELO3C022374.2 Cucumis melo HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 64.9
CsaV3_6G007580 Cucumis sativus L. HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 64.9
FAN22G1659 Fragaria x ananassa HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 62.2
Potri.006G079200 Populus trichocarpa HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 64.9
QL11p008185 Quercus lobata HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 67.6
QL11p008332 Quercus lobata HOM05D000309 ORTHO05D005508 1.2e-06 55.5 37 67.6
SMO002G0015 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 62.2
SMO356G0245 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 62.2
SMO356G0651 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 62.2
TPR.G21349 Trifolium pratense HOM05D000309 ORTHO05D000271 1.2e-06 55.5 37 67.6
arahy.Tifrunner.gnm1.ann1.GI3VL1 Arachis hypogaea HOM05D000309 ORTHO05D000271 1.6e-06 55.1 37 62.2
MSTRG.19399 Avicennia marina HOM05D000309 ORTHO05D000271 1.6e-06 55.1 37 67.6
Os02g0139700 Oryza sativa ssp. japonica HOM05D000309 ORTHO05D000271 1.6e-06 55.1 37 64.9
Zm00001eb181200 Zea mays HOM05D000309 ORTHO05D005508 1.6e-06 55.1 38 57.9
CARHR103980 Cardamine hirsuta HOM05D000309 ORTHO05D000271 2.1e-06 54.7 37 67.6
BcaB06g26494 Brassica carinata HOM05D000309 ORTHO05D000271 2.7e-06 54.3 34 70.6
FvH4_4g06000 Fragaria vesca HOM05D000309 ORTHO05D000271 2.7e-06 54.3 37 59.5
FAN12G3477 Fragaria x ananassa HOM05D000309 ORTHO05D000271 2.7e-06 54.3 37 59.5
TAR383G0405 Trochodendron aralioides HOM05D000309 ORTHO05D000271 2.7e-06 54.3 37 64.9
Aqoxy4G01427 Aquilegia oxysepala HOM05D000309 ORTHO05D000271 3.6e-06 53.9 37 73.0
Haze_19093 Corylus avellana HOM05D000309 ORTHO05D000271 3.6e-06 53.9 31 80.6
SGA_v2.0_scaffold55G19884 Striga asiatica HOM05D000309 ORTHO05D000271 3.6e-06 53.9 37 62.2
TPR.G2705 Trifolium pratense HOM05D000309 ORTHO05D000271 4.7e-06 53.5 37 64.9
Aqoxy1G01425 Aquilegia oxysepala HOM05D000309 ORTHO05D000271 6.1e-06 53.1 36 72.2
Lj2g0024016 Lotus japonicus HOM05D000309 ORTHO05D000271 6.1e-06 53.1 37 70.3
Nitab4.5_0012291g0010 Nicotiana tabacum HOM05D000309 ORTHO05D000271 6.1e-06 53.1 37 67.6
Duzib150G0014 Durio zibethinus HOM05D000309 ORTHO05D000271 8.0e-06 52.8 37 62.2
Gorai.009G043200 Gossypium raimondii HOM05D000309 ORTHO05D000271 8.0e-06 52.8 39 64.1
Hma1.2p1_4114F.1_g338300 Hydrangea macrophylla HOM05D000309 ORTHO05D000271 8.0e-06 52.8 37 64.9


User provided reference genes

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