Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0148551 Rosa chinensis HOM05D003380 ORTHO05D004232 1.6e-45 185.7 90 100.0
RcHm_v2.0_Chr6g0305401 Rosa chinensis HOM05D003380 ORTHO05D004232 9.8e-35 149.8 115 70.4
FvH4_2g36480 Fragaria vesca HOM05D003380 ORTHO05D004232 8.3e-34 146.7 115 67.8
FAN15G0754 Fragaria x ananassa HOM05D003380 ORTHO05D004232 8.3e-34 146.7 115 67.8
FAN20G0682 Fragaria x ananassa HOM05D003380 ORTHO05D004232 8.3e-34 146.7 115 67.8
THA.LOC104819924 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 3.2e-33 144.8 115 67.0
Ah.09g234230 Amaranthus hybridus HOM05D003380 ORTHO05D004232 4.1e-33 144.4 115 65.2
TWI34G1105 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 4.1e-33 144.4 115 66.1
CSS0000176 Camellia sinensis var. sinensis HOM05D003380 ORTHO05D004232 7.0e-33 143.7 115 66.1
arahy.Tifrunner.gnm1.ann1.21Q806 Arachis hypogaea HOM05D003380 ORTHO05D004232 9.2e-33 143.3 115 65.2
arahy.Tifrunner.gnm1.ann1.AGKE2S Arachis hypogaea HOM05D003380 ORTHO05D004232 9.2e-33 143.3 115 65.2
Phvul.009G103400 Phaseolus vulgaris HOM05D003380 ORTHO05D004232 9.2e-33 143.3 115 65.2
ClCG08G012530 Citrullus lanatus HOM05D003380 ORTHO05D004232 1.2e-32 142.9 115 64.3
Duzib150G0262 Durio zibethinus HOM05D003380 ORTHO05D004232 1.2e-32 142.9 115 66.1
Glyma.04G077400 Glycine max HOM05D003380 ORTHO05D004232 1.2e-32 142.9 115 64.3
Cfa013309 Carpinus fangiana HOM05D003380 ORTHO05D004232 1.6e-32 142.5 115 65.2
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 1.6e-32 142.5 115 64.3
Duzib168G0804 Durio zibethinus HOM05D003380 ORTHO05D004232 1.6e-32 142.5 115 65.2
Hund19388 Selenicereus undatus HOM05D003380 ORTHO05D004232 1.6e-32 142.5 115 65.2
Lj1g0002632 Lotus japonicus HOM05D003380 ORTHO05D004232 2.1e-32 142.1 115 64.3
Lalb_Chr08g0243471 Lupinus albus HOM05D003380 ORTHO05D004232 2.1e-32 142.1 115 64.3
Sed0022704 Sechium edule HOM05D003380 ORTHO05D004232 2.1e-32 142.1 115 63.5
Glyma.06G078500 Glycine max HOM05D003380 ORTHO05D004232 2.7e-32 141.7 115 63.5
MD15G1103300 Malus domestica HOM05D003380 ORTHO05D004232 2.7e-32 141.7 115 65.2
Manes.03G001100 Manihot esculenta HOM05D003380 ORTHO05D004232 2.7e-32 141.7 115 64.3
Hund03262 Selenicereus undatus HOM05D003380 ORTHO05D004232 2.7e-32 141.7 115 64.3
Cpa.g.sc148.3 Carica papaya HOM05D003380 ORTHO05D004232 3.5e-32 141.4 115 65.2
Cfa010143 Carpinus fangiana HOM05D003380 ORTHO05D004232 3.5e-32 141.4 115 63.5
CiPaw.07G209900 Carya illinoinensis HOM05D003380 ORTHO05D004232 3.5e-32 141.4 115 63.5
CiPaw.08G021300 Carya illinoinensis HOM05D003380 ORTHO05D004232 3.5e-32 141.4 115 63.5
FvH4_7g10810 Fragaria vesca HOM05D003380 ORTHO05D004232 3.5e-32 141.4 92 77.2
Gohir.D13G185700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 3.5e-32 141.4 115 65.2
Gorai.013G211700 Gossypium raimondii HOM05D003380 ORTHO05D004232 3.5e-32 141.4 115 65.2
Thecc.09G002600 Theobroma cacao HOM05D003380 ORTHO05D004232 3.5e-32 141.4 115 65.2
Medtr3g109210 Medicago truncatula HOM05D003380 ORTHO05D004232 4.6e-32 141.0 115 63.5
Psat5g024560 Pisum sativum HOM05D003380 ORTHO05D004232 4.6e-32 141.0 115 63.5
Sed0024231 Sechium edule HOM05D003380 ORTHO05D004232 4.6e-32 141.0 115 62.6
Atru.chr7.2666 Acer truncatum HOM05D003380 ORTHO05D004232 6.0e-32 140.6 115 63.5
TPR.G12492 Trifolium pratense HOM05D003380 ORTHO05D004232 6.0e-32 140.6 115 63.5
GSVIVG01035567001 Vitis vinifera HOM05D003380 ORTHO05D004232 6.0e-32 140.6 115 62.6
COL.COLO4_18628 Corchorus olitorius HOM05D003380 ORTHO05D004232 7.8e-32 140.2 115 64.3
Dinv37493 Davidia involucrata HOM05D003380 ORTHO05D004232 7.8e-32 140.2 115 62.6
Gohir.A13G181700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 7.8e-32 140.2 115 64.3
PSO170G5091 Papaver somniferum HOM05D003380 ORTHO05D004232 7.8e-32 140.2 115 63.5
PSO210G2204 Papaver somniferum HOM05D003380 ORTHO05D004232 7.8e-32 140.2 115 63.5
Prupe.1G456200 Prunus persica HOM05D003380 ORTHO05D004232 7.8e-32 140.2 115 64.3
TWI63G0177 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 7.8e-32 140.2 115 63.5
Aqoxy7G02672 Aquilegia oxysepala HOM05D003380 ORTHO05D004232 1.0e-31 139.8 115 63.5
CARHR239170 Cardamine hirsuta HOM05D003380 ORTHO05D004232 1.0e-31 139.8 115 64.3
Eucgr.C02133 Eucalyptus grandis HOM05D003380 ORTHO05D004232 1.0e-31 139.8 115 62.6
Lalb_Chr23g0269261 Lupinus albus HOM05D003380 ORTHO05D004232 1.0e-31 139.8 115 63.5
TAR383G0138 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.0e-31 139.8 115 62.6
TAR383G1016 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.0e-31 139.8 115 62.6
VMungo1309G0072 Vigna mungo HOM05D003380 ORTHO05D004232 1.0e-31 139.8 115 62.6
Ciclev10009349m.g Citrus clementina HOM05D003380 ORTHO05D004232 1.3e-31 139.4 115 63.5
ECA240G0102 Erigeron canadensis HOM05D003380 ORTHO05D004232 1.3e-31 139.4 115 61.7
HanXRQChr03g0081271 Helianthus annuus HOM05D003380 ORTHO05D004232 1.3e-31 139.4 115 61.7
TAR636G3035 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.3e-31 139.4 115 60.9
Atru.chr7.2690 Acer truncatum HOM05D003380 ORTHO05D004232 1.7e-31 139.0 115 62.6
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.7e-31 139.0 115 63.5
CDE04G3274 Ceratophyllum demersum HOM05D003380 ORTHO05D004232 1.7e-31 139.0 115 63.5
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 1.7e-31 139.0 115 62.6
Aa31LG2G19070 Aethionema arabicum HOM05D003380 ORTHO05D004232 2.3e-31 138.7 115 63.5
Atru.chr13.1615 Acer truncatum HOM05D003380 ORTHO05D004232 3.0e-31 138.3 115 62.6
CANSAT25G3289 Cannabis sativa HOM05D003380 ORTHO05D004232 3.0e-31 138.3 115 61.7
Dinv26471 Davidia involucrata HOM05D003380 ORTHO05D004232 3.0e-31 138.3 115 61.7
Nn3g19887 Nelumbo nucifera HOM05D003380 ORTHO05D004232 3.0e-31 138.3 115 63.5
Nitab4.5_0007423g0010 Nicotiana tabacum HOM05D003380 ORTHO05D004232 3.0e-31 138.3 115 63.5
THA.LOC104803586 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 3.0e-31 138.3 115 63.5
MELO3C011172.2 Cucumis melo HOM05D003380 ORTHO05D004232 3.9e-31 137.9 116 61.2
MD13G1234400 Malus domestica HOM05D003380 ORTHO05D004232 3.9e-31 137.9 115 61.7
MD16G1239000 Malus domestica HOM05D003380 ORTHO05D004232 3.9e-31 137.9 115 61.7
Actinidia02482 Actinidia chinensis HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 61.7
AL7G20780 Arabidopsis lyrata HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
BcaC01g01103 Brassica carinata HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
BcaC09g51907 Brassica carinata HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
BcaNung05317 Brassica carinata HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
A01p07000 Brassica napus HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
A03p60610 Brassica napus HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
A08p18700 Brassica napus HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
C01p07730 Brassica napus HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
C03p88100 Brassica napus HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
C07p58510 Brassica napus HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
BolC1t00756H Brassica oleracea HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
BraA01t00651Z Brassica rapa HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
BraA03t15102Z Brassica rapa HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
Carub.0007s0926 Capsella rubella HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
Thhalv10026126m.g Eutrema salsugineum HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
Gohir.D05G068600 Gossypium hirsutum HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 64.3
Gorai.009G069600 Gossypium raimondii HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 64.3
HanXRQChr03g0067311 Helianthus annuus HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 60.9
Sp7g29150 Schrenkiella parvula HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 63.5
unitig_578.g16397 Utricularia gibba HOM05D003380 ORTHO05D004232 5.1e-31 137.5 115 60.9
MSTRG.10467 Avicennia marina HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 61.7
BolC7t46306H Brassica oleracea HOM05D003380 ORTHO05D004232 6.6e-31 137.1 116 62.9
CAN.G106.10 Capsicum annuum HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 62.6
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 61.7
AUR62038728 Chenopodium quinoa HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 61.7
Dinv12605 Davidia involucrata HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 60.0
Gohir.A05G066200 Gossypium hirsutum HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 63.5
Lsat_1_v5_gn_5_56460 Lactuca sativa HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 60.9
MBI13_g34299_MAGBIO Magnolia biondii HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 62.6
Oeu036948.2 Olea europaea HOM05D003380 ORTHO05D004232 6.6e-31 137.1 115 60.9
BolC3t21119H Brassica oleracea HOM05D003380 ORTHO05D004232 8.6e-31 136.7 117 62.4
BraA08t33831Z Brassica rapa HOM05D003380 ORTHO05D004232 8.6e-31 136.7 117 62.4
Lj4A319G22 Lonicera japonica HOM05D003380 ORTHO05D004232 8.6e-31 136.7 115 61.7
MD08G1124600 Malus domestica HOM05D003380 ORTHO05D004232 8.6e-31 136.7 117 64.1
FAN03G3318 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.1e-30 136.3 115 63.5
HPP92_004718 Vanilla planifolia HOM05D003380 ORTHO05D004232 1.1e-30 136.3 115 60.9
GSVIVG01032253001 Vitis vinifera HOM05D003380 ORTHO05D004232 1.1e-30 136.3 115 60.0
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 1.5e-30 136.0 115 60.9
BcaNung01533 Brassica carinata HOM05D003380 ORTHO05D004232 1.5e-30 136.0 115 62.6
Nitab4.5_0000404g0220 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.5e-30 136.0 106 66.0
Sc06g0001250 Simmondsia chinensis HOM05D003380 ORTHO05D004232 1.5e-30 136.0 115 62.6
SGA_v2.0_scaffold450G51802 Striga asiatica HOM05D003380 ORTHO05D004232 1.9e-30 135.6 115 60.9
CsaV3_2G031230 Cucumis sativus L. HOM05D003380 ORTHO05D004232 2.5e-30 135.2 115 61.7
Hma1.2p1_0443F.1_g154000 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 2.5e-30 135.2 115 60.0
Peaxi162Scf00320g00122 Petunia axillaris HOM05D003380 ORTHO05D004232 3.3e-30 134.8 115 60.0
Actinidia38523 Actinidia chinensis HOM05D003380 ORTHO05D004232 5.6e-30 134.0 115 58.3
Haze_21791 Corylus avellana HOM05D003380 ORTHO05D004232 5.6e-30 134.0 137 54.7
AT4G31300 Arabidopsis thaliana HOM05D003380 ORTHO05D004232 7.3e-30 133.7 115 61.7
Cc00_g00190 Coffea canephora HOM05D003380 ORTHO05D004232 7.3e-30 133.7 115 59.1
Nn1g03129 Nelumbo nucifera HOM05D003380 ORTHO05D004232 7.3e-30 133.7 115 60.9
Potri.006G077900 Populus trichocarpa HOM05D003380 ORTHO05D004232 7.3e-30 133.7 115 60.0
Prupe.1G065200 Prunus persica HOM05D003380 ORTHO05D004232 7.3e-30 133.7 115 60.0
Sabra06G0058900 Salix brachista HOM05D003380 ORTHO05D004232 7.3e-30 133.7 115 60.0
Sabra18G0120300 Salix brachista HOM05D003380 ORTHO05D004232 7.3e-30 133.7 115 59.1
CAN.G228.7 Capsicum annuum HOM05D003380 ORTHO05D004232 9.5e-30 133.3 115 60.9
Solyc07g016200.3 Solanum lycopersicum HOM05D003380 ORTHO05D004232 9.5e-30 133.3 115 61.7
Sopen07g005910 Solanum pennellii HOM05D003380 ORTHO05D004232 9.5e-30 133.3 115 61.7
PGSC0003DMG400013685 Solanum tuberosum HOM05D003380 ORTHO05D004232 9.5e-30 133.3 115 60.0
Potri.018G145900 Populus trichocarpa HOM05D003380 ORTHO05D004232 1.2e-29 132.9 115 59.1
Rhsim03G0268700 Rhododendron simsii HOM05D003380 ORTHO05D004232 1.2e-29 132.9 115 60.0
RhsimUnG0051400 Rhododendron simsii HOM05D003380 ORTHO05D004232 1.2e-29 132.9 115 60.0
PGSC0003DMG400009772 Solanum tuberosum HOM05D003380 ORTHO05D004232 1.2e-29 132.9 115 60.9
BcaB03g12688 Brassica carinata HOM05D003380 ORTHO05D004232 2.8e-29 131.7 115 61.7
Migut.J00835 Erythranthe guttata HOM05D003380 ORTHO05D004232 2.8e-29 131.7 115 57.4
Rhsim01G0218400 Rhododendron simsii HOM05D003380 ORTHO05D004232 3.6e-29 131.3 115 59.1
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 6.2e-29 130.6 115 59.1
Migut.L01915 Erythranthe guttata HOM05D003380 ORTHO05D004232 6.2e-29 130.6 115 58.3
QL12p025844 Quercus lobata HOM05D003380 ORTHO05D004232 8.1e-29 130.2 132 55.3
FAN06G1260 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.4e-28 129.4 112 62.5
FAN06G5002 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.4e-28 129.4 112 62.5
Nitab4.5_0001535g0020 Nicotiana tabacum HOM05D003380 ORTHO05D004232 4.0e-28 127.9 115 60.9
Os02g0770000 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 5.2e-28 127.5 115 56.5
vmacro15777 Vaccinium macrocarpon HOM05D003380 ORTHO05D004232 8.9e-28 126.7 115 57.4
Zm00001eb270240 Zea mays HOM05D003380 ORTHO05D004232 8.9e-28 126.7 115 57.4
Oeu021030.1 Olea europaea HOM05D003380 ORTHO05D004232 1.2e-27 126.3 132 53.0
Os06g0139900 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 1.2e-27 126.3 115 56.5
Zm00001eb377530 Zea mays HOM05D003380 ORTHO05D004232 1.2e-27 126.3 115 56.5
Actinidia31878 Actinidia chinensis HOM05D003380 ORTHO05D004232 2.6e-27 125.2 106 61.3
SGA_v2.0_scaffold21G09610 Striga asiatica HOM05D003380 ORTHO05D004232 4.4e-27 124.4 135 51.9
Mapoly0016s0041 Marchantia polymorpha HOM05D003380 ORTHO05D004232 1.1e-25 119.8 115 53.9
SalBow6G4635 Salvia bowleyana HOM05D003380 ORTHO05D004232 2.4e-25 118.6 105 57.1
Nitab4.5_0000899g0140 Nicotiana tabacum HOM05D003380 ORTHO05D004232 3.2e-25 118.2 95 67.4
AagrBONN_evm.TU.Sc2ySwM_228.613 Anthoceros agrestis HOM05D003380 ORTHO05D004232 4.6e-24 114.4 115 53.0
CBR_g55787 Chara braunii HOM05D003380 ORTHO05D004232 2.3e-23 112.1 114 51.8
Pp3c18_17380 Physcomitrium patens HOM05D003380 ORTHO05D004232 8.6e-23 110.2 115 51.3
SMO117G0031 Selaginella moellendorffii HOM05D003380 ORTHO05D004232 1.1e-22 109.8 115 47.8
Sabra18G0127800 Salix brachista HOM05D003380 ORTHO05D004232 4.3e-22 107.8 119 51.3
Ca_15639_v3 Cicer arietinum L. HOM05D003380 ORTHO05D004232 7.1e-17 90.5 115 47.0
SEGI_36081 Sequoiadendron giganteum HOM05D003380 ORTHO05D004232 3.5e-16 88.2 99 50.5
Lj6A275T63 Lonicera japonica HOM05D003380 ORTHO05D004232 6.0e-16 87.4 90 53.3
DCAR_000673 Daucus carota HOM05D003380 ORTHO05D004232 7.8e-16 87.0 54 77.8
Cre06.g279000 Chlamydomonas reinhardtii HOM05D003380 ORTHO05D004232 8.7e-15 83.6 114 36.8
PRCOL_00006052 Prasinoderma coloniale HOM05D003380 ORTHO05D004232 1.2e-13 79.7 113 35.4
Nitab4.5_0000749g0120 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.1e-12 76.6 116 44.0
Cre12.g531100 Chlamydomonas reinhardtii HOM05D003380 ORTHO05D004232 5.3e-12 74.3 113 33.6
DCAR_000674 Daucus carota HOM05D003380 ORTHO05D004232 5.3e-12 74.3 37 86.5
PRCOL_00005615 Prasinoderma coloniale HOM05D003380 ORTHO05D004232 1.2e-11 73.2 115 34.8
FAN01G0072 Fragaria x ananassa HOM05D003380 ORTHO05D004232 5.8e-11 70.9 37 81.1
Sopen05g027780 Solanum pennellii HOM05D003380 ORTHO05D004232 4.9e-10 67.8 108 38.9
Atru.chr1.909 Acer truncatum HOM05D003380 ORTHO05D004232 8.4e-10 67.0 55 60.0
MCO16G567 Micromonas commoda HOM05D003380 ORTHO05D004232 1.4e-09 66.2 120 33.3
Haze_27561 Corylus avellana HOM05D003380 ORTHO05D004232 1.2e-08 63.2 113 30.1
RcHm_v2.0_Chr6g0299991 Rosa chinensis HOM05D003380 ORTHO05D342408 7.8e-08 60.5 81 48.1
DCAR_004564 Daucus carota HOM05D003380 ORTHO05D004232 3.3e-06 55.1 25 92.0
Hma1.2p1_0263F.1_g105450 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 3.3e-06 55.1 26 88.5


User provided reference genes

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