Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 3.6e-83 311.6 165 100.0
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 1.6e-78 296.2 165 87.9
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.3e-77 293.1 165 87.3
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.2e-75 286.6 165 85.5
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 5.7e-65 251.1 165 78.2
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 5.7e-65 251.1 165 78.2
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 8.0e-59 230.7 180 73.9
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 4.1e-55 218.4 190 63.7
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 2.3e-53 212.6 154 68.2
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 1.4e-50 203.4 126 77.0
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 2.3e-50 202.6 172 62.8
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 9.8e-49 197.2 169 59.2
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 1.3e-48 196.8 169 59.8
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 1.7e-48 196.4 172 61.0
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 2.2e-48 196.1 169 59.2
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 3.7e-48 195.3 103 85.4
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 1.2e-46 190.3 101 85.1
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 2.1e-46 189.5 101 83.2
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 3.5e-46 188.7 168 57.1
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 3.5e-46 188.7 103 85.4
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 4.6e-46 188.3 167 61.1
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 6.0e-46 188.0 98 85.7
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 1.0e-45 187.2 128 70.3
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 1.0e-45 187.2 181 59.7
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 1.0e-45 187.2 187 56.7
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 2.3e-45 186.0 101 84.2
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 2.3e-45 186.0 101 84.2
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 3.0e-45 185.7 94 89.4
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 3.0e-45 185.7 125 71.2
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 2.5e-44 182.6 166 56.6
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 2.5e-44 182.6 169 57.4
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 4.3e-44 181.8 102 82.4
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 9.5e-44 180.6 107 74.8
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 1.2e-43 180.3 104 79.8
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 2.1e-43 179.5 147 59.2
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 4.7e-43 178.3 146 67.1
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 6.2e-43 177.9 163 61.3
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 3.1e-42 175.6 100 81.0
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 5.2e-42 174.9 97 79.4
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 6.8e-42 174.5 107 72.9
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 2.0e-41 172.9 165 52.7
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 2.0e-41 172.9 165 52.1
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 3.4e-41 172.2 101 76.2
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 4.9e-40 168.3 159 54.1
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 1.4e-39 166.8 151 58.3
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 2.4e-39 166.0 98 77.6
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 1.6e-38 163.3 101 77.2
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 3.0e-37 159.1 175 51.4
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 5.1e-37 158.3 96 76.0
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.5e-36 156.8 107 71.0
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 1.9e-36 156.4 99 72.7
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 1.9e-36 156.4 99 72.7
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 1.9e-36 156.4 99 72.7
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 1.9e-36 156.4 99 72.7
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 1.9e-36 156.4 99 72.7
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 1.9e-36 156.4 169 50.9
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 2.5e-36 156.0 115 69.6
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 3.3e-36 155.6 103 68.9
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 4.3e-36 155.2 99 71.7
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 4.3e-36 155.2 97 75.3
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 4.3e-36 155.2 114 66.7
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 7.3e-36 154.5 99 72.7
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 9.6e-36 154.1 99 71.7
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 9.6e-36 154.1 99 71.7
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 9.6e-36 154.1 99 71.7
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 1.6e-35 153.3 165 51.5
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 3.6e-35 152.1 95 73.7
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 4.7e-35 151.8 100 71.0
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 6.2e-35 151.4 102 71.6
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 8.1e-35 151.0 102 70.6
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 1.4e-34 150.2 167 55.7
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 1.8e-34 149.8 102 69.6
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 2.4e-34 149.4 101 69.3
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 4.0e-34 148.7 97 72.2
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 4.0e-34 148.7 84 81.0
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 2.0e-33 146.4 101 69.3
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 2.2e-32 142.9 100 69.0
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 3.8e-32 142.1 97 68.0
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 6.4e-32 141.4 121 62.8
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 8.4e-32 141.0 135 55.6
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 1.4e-31 140.2 155 51.6
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 7.8e-30 134.4 103 60.2
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 1.0e-29 134.0 97 67.0
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 5.1e-29 131.7 164 42.7
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 1.3e-27 127.1 82 74.4
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 1.4e-26 123.6 97 61.9
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 4.0e-26 122.1 89 68.5
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 5.4e-23 111.7 126 47.6
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 1.2e-22 110.5 109 56.9
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 3.9e-21 105.5 66 71.2
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 3.9e-21 105.5 102 49.0
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 9.6e-20 100.9 64 78.1
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 1.3e-19 100.5 97 56.7
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 1.6e-19 100.1 65 70.8
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 8.1e-19 97.8 68 70.6
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 1.4e-18 97.1 72 65.3
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 5.3e-18 95.1 67 73.1
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 1.2e-17 94.0 81 56.8
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 1.7e-16 90.1 157 37.6
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 6.4e-16 88.2 86 46.5
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 1.9e-15 86.7 134 39.6
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 3.2e-15 85.9 63 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 6.0e-14 81.6 65 63.1
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 1.8e-13 80.1 95 42.1
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 3.3e-12 75.9 105 43.8
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 1.2e-09 67.4 77 45.5


User provided reference genes

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