Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.2e-261 906.0 458 100.0
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.0e-241 839.7 461 93.5
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.8e-241 839.0 461 93.5
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.8e-240 833.9 461 93.1
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.9e-239 831.6 461 93.1
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 6.4e-239 830.5 461 93.1
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.1e-214 750.0 468 83.1
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.8e-210 735.3 463 81.9
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 3.4e-208 728.4 456 82.7
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.7e-205 718.8 468 78.8
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.4e-201 705.7 462 79.2
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 6.9e-201 704.1 461 77.0
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.9e-199 698.0 461 76.4
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 8.4e-199 697.2 461 75.9
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.4e-198 695.7 463 77.8
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.4e-198 695.7 461 75.7
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 4.2e-198 694.9 462 76.6
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 5.3e-193 677.9 462 75.3
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 9.0e-193 677.2 462 74.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.0e-191 673.7 474 73.2
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.5e-190 669.1 462 75.5
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 4.6e-189 664.8 462 74.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 7.9e-189 664.1 471 74.3
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 3.9e-188 661.8 462 74.9
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.9e-187 659.4 462 73.8
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 3.3e-187 658.7 461 73.1
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 3.1e-185 652.1 463 73.7
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 6.9e-185 651.0 461 71.1
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 6.9e-185 651.0 477 72.7
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 4.5e-184 648.3 444 75.2
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.0e-183 647.1 463 73.4
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.2e-183 646.0 461 72.0
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 5.0e-183 644.8 462 71.9
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 5.0e-183 644.8 463 73.9
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 4.2e-182 641.7 482 71.6
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.2e-181 640.2 463 72.1
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 2.7e-181 639.0 462 72.3
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.9e-179 632.9 461 70.1
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 5.7e-179 631.3 462 71.4
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.3e-178 630.2 477 70.0
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 2.8e-178 629.0 461 70.3
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 4.1e-177 625.2 459 69.9
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.0e-176 622.9 454 70.9
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.0e-176 622.9 463 69.5
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 7.7e-176 620.9 471 69.9
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.3e-175 620.2 462 69.9
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.7e-175 619.8 461 69.6
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.2e-175 619.4 456 70.8
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.1e-174 617.1 491 68.4
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 3.2e-174 615.5 462 71.0
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 3.2e-174 615.5 496 66.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 4.2e-174 615.1 442 71.9
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 4.2e-174 615.1 461 70.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.2e-173 613.6 461 70.3
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.6e-173 612.1 465 68.6
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 7.9e-173 610.9 455 70.3
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.8e-172 609.8 456 71.3
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 6.7e-172 607.8 455 69.9
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 9.7e-171 604.0 457 68.3
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.7e-170 603.2 463 67.4
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.8e-170 602.4 457 68.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 4.8e-170 601.7 463 68.9
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 4.8e-170 601.7 461 69.4
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 8.2e-170 600.9 463 68.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.1e-169 600.5 461 68.3
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.1e-169 600.5 456 67.8
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.4e-169 600.1 463 67.0
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.4e-169 599.4 456 69.1
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 4.1e-169 598.6 541 59.1
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 5.3e-169 598.2 455 67.9
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 6.9e-169 597.8 463 68.3
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 6.9e-169 597.8 452 69.5
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.0e-168 596.3 457 68.7
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.6e-168 595.9 457 68.7
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.6e-168 595.9 457 68.7
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.6e-168 595.9 463 69.5
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.5e-168 595.1 464 68.5
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 5.9e-168 594.7 459 68.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.3e-167 593.6 455 68.4
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.1e-166 590.5 453 67.8
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.5e-166 589.3 453 67.3
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.7e-165 585.9 455 68.4
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.6e-165 585.5 456 67.1
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.8e-164 583.2 453 65.6
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 2.3e-164 582.8 454 68.5
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.9e-164 582.0 461 66.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 5.2e-164 581.6 459 68.2
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.1e-163 580.5 433 70.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.1e-163 580.5 455 65.9
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 2.0e-163 579.7 454 68.5
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.6e-163 579.3 461 65.5
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.3e-163 578.9 461 65.7
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 4.4e-163 578.6 453 67.3
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 9.7e-163 577.4 445 68.3
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.7e-162 576.6 445 68.3
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.2e-162 576.2 456 68.0
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.8e-162 575.9 454 68.1
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.8e-162 575.9 455 68.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.7e-162 575.5 461 65.5
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.1e-161 573.9 458 67.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 7.0e-161 571.2 433 68.1
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.6e-160 570.1 451 68.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.6e-160 569.3 453 67.1
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.5e-160 568.9 465 66.2
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.9e-160 568.2 459 65.8
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.9e-160 568.2 461 65.7
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.3e-159 567.0 452 65.5
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 3.8e-159 565.5 434 67.5
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.2e-157 560.5 454 66.5
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.1e-157 559.7 429 70.6
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.0e-156 555.8 455 65.1
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.3e-154 550.4 461 63.1
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 8.2e-154 547.7 455 65.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 4.1e-153 545.4 453 66.9
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.7e-151 540.0 453 66.2
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.2e-149 533.9 464 62.9
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 8.0e-149 531.2 445 66.5
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.8e-148 530.0 516 56.4
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 4.0e-148 528.9 411 68.1
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.7e-147 525.0 448 62.1
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 9.5e-142 507.7 420 66.0
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 6.8e-140 501.5 455 59.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.4e-137 493.0 437 62.0
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-136 490.3 433 59.8
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.1e-134 484.2 453 58.9
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.2e-129 466.1 404 62.9
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 7.0e-129 464.9 465 56.8
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.8e-124 450.3 322 72.0
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 4.0e-124 449.1 513 53.8
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.4e-123 445.7 388 62.1
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.6e-120 435.6 436 54.1
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.3e-119 434.1 316 74.7
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.8e-116 423.7 481 51.4
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.5e-115 420.6 459 52.5
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 9.9e-115 417.9 339 65.5
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 3.8e-106 389.4 461 49.7
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.8e-99 365.5 256 71.9
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 5.8e-99 365.5 464 46.6
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.4e-90 335.5 304 60.5
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.3e-86 322.8 323 57.0
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.7e-82 310.8 464 41.4
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.1e-79 299.3 290 60.0
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.8e-74 283.1 216 68.1
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 4.2e-73 279.6 199 69.8
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.6e-72 277.7 199 67.8
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 7.9e-72 275.4 261 59.8
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 7.4e-70 268.9 304 51.3
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 9.7e-70 268.5 213 67.1
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.2e-67 261.5 199 66.3
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 2.9e-66 256.9 184 74.5
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.7e-64 250.4 238 58.4
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.9e-58 230.3 445 40.0
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.4e-55 221.5 158 70.9
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 4.4e-54 216.5 219 53.9
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.1e-49 201.8 292 43.5
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 3.6e-48 196.8 120 79.2
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.8e-45 187.2 136 71.3
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.4e-44 184.9 177 54.2
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.7e-42 177.9 358 36.3
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.5e-41 172.9 142 63.4
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.6e-40 170.2 177 52.0
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.2e-38 165.2 309 36.2
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 1.1e-36 158.7 307 33.9
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 9.1e-28 129.0 119 58.0
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 4.5e-27 126.7 79 79.7
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.0e-26 125.6 163 45.4
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.7e-26 124.8 79 83.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 7.2e-25 119.4 154 52.6
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.0e-23 115.5 121 61.2
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 9.2e-20 102.4 126 53.2
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.7e-19 100.9 113 59.3
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 2.3e-18 97.8 78 65.4
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 1.2e-11 75.5 112 46.4
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.5e-11 73.9 56 64.3
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 3.0e-10 70.9 51 68.6
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.9e-10 70.5 48 72.9
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.8e-08 64.3 42 73.8
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 2.8e-08 64.3 114 44.7
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 1.4e-07 62.0 112 43.8
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-06 58.5 61 50.8
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 4.4e-06 57.0 160 32.5
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 7.5e-06 56.2 36 66.7


User provided reference genes

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