Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 3.9e-64 248.1 133 100.0
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 2.9e-51 205.3 127 88.2
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 5.2e-40 167.9 133 67.7
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 6.3e-38 161.0 133 63.9
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 2.6e-36 155.6 135 60.0
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 5.9e-36 154.5 133 61.7
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 2.2e-35 152.5 136 60.3
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 8.5e-35 150.6 137 59.9
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 1.9e-34 149.4 136 58.8
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 7.2e-34 147.5 137 59.1
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 1.6e-33 146.4 134 57.5
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 2.1e-33 146.0 127 59.1
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 3.6e-33 145.2 131 59.5
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 6.1e-33 144.4 125 60.8
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 8.0e-33 144.1 125 60.8
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 8.0e-33 144.1 115 60.9
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 6.8e-32 141.0 137 56.2
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 6.8e-32 141.0 136 59.6
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 4.4e-31 138.3 119 58.8
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 1.7e-30 136.3 125 59.2
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 2.8e-30 135.6 135 55.6
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 2.8e-30 135.6 136 57.4
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 4.8e-30 134.8 134 53.7
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 1.1e-29 133.7 134 53.7
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 1.1e-29 133.7 134 53.7
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 1.1e-29 133.7 134 53.7
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 1.1e-29 133.7 127 59.8
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 1.4e-29 133.3 131 53.4
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 1.4e-29 133.3 134 53.7
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 1.4e-29 133.3 121 58.7
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 1.8e-29 132.9 118 58.5
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 2.4e-29 132.5 133 53.4
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 2.4e-29 132.5 125 60.8
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 2.4e-29 132.5 120 60.0
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 3.1e-29 132.1 134 53.7
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 3.1e-29 132.1 130 53.1
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 4.1e-29 131.7 134 50.7
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 5.3e-29 131.3 136 54.4
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 5.3e-29 131.3 132 53.0
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 5.3e-29 131.3 132 53.0
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 5.3e-29 131.3 136 56.6
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 5.3e-29 131.3 121 58.7
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 7.0e-29 131.0 132 53.0
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 9.1e-29 130.6 132 53.0
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 9.1e-29 130.6 132 53.0
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 9.1e-29 130.6 120 58.3
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 2.7e-28 129.0 136 52.9
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 3.5e-28 128.6 133 51.1
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 3.5e-28 128.6 109 61.5
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 4.5e-28 128.3 127 55.1
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 7.7e-28 127.5 120 56.7
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 7.7e-28 127.5 120 56.7
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 1.3e-27 126.7 137 52.6
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.7e-27 126.3 135 52.6
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.7e-27 126.3 135 53.3
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 1.7e-27 126.3 135 54.8
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 1.7e-27 126.3 137 51.8
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 2.9e-27 125.6 126 52.4
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.9e-27 125.6 105 59.0
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 3.8e-27 125.2 136 50.7
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 3.8e-27 125.2 134 50.0
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 6.5e-27 124.4 135 53.3
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 8.5e-27 124.0 136 50.7
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 1.1e-26 123.6 136 50.7
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 1.1e-26 123.6 135 52.6
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 1.5e-26 123.2 134 51.5
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 1.5e-26 123.2 134 51.5
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 1.5e-26 123.2 134 51.5
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 1.9e-26 122.9 135 52.6
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 7.2e-26 120.9 130 50.8
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 7.2e-26 120.9 130 50.0
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 1.2e-25 120.2 112 55.4
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 1.2e-25 120.2 135 53.3
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.6e-25 119.8 96 58.3
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 2.7e-25 119.0 132 49.2
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 2.7e-25 119.0 129 52.7
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 6.1e-25 117.9 134 54.5
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 8.0e-25 117.5 131 48.1
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 8.0e-25 117.5 129 51.9
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 8.0e-25 117.5 131 51.1
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 1.0e-24 117.1 135 51.1
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 1.0e-24 117.1 141 46.8
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.0e-24 117.1 108 54.6
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 1.0e-24 117.1 111 51.4
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 1.8e-24 116.3 133 50.4
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 1.8e-24 116.3 127 48.8
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 5.2e-24 114.8 133 49.6
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 6.8e-24 114.4 127 49.6
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 6.8e-24 114.4 129 50.4
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 8.8e-24 114.0 132 52.3
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.2e-23 113.6 141 48.9
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 1.5e-23 113.2 133 49.6
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 1.5e-23 113.2 133 49.6
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 2.6e-23 112.5 130 48.5
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 4.4e-23 111.7 124 51.6
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 4.4e-23 111.7 132 49.2
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 5.7e-23 111.3 141 47.5
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 7.5e-23 110.9 145 44.8
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 6.3e-22 107.8 112 48.2
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 8.3e-22 107.5 133 42.9
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 1.4e-21 106.7 91 57.1
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 1.8e-21 106.3 125 46.4
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 4.1e-21 105.1 127 46.5
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 4.1e-21 105.1 112 52.7
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 9.1e-21 104.0 133 45.9
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 1.2e-20 103.6 123 48.8
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 1.2e-20 103.6 122 49.2
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 1.2e-20 103.6 124 48.4
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 2.7e-20 102.4 127 46.5
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 2.3e-19 99.4 73 64.4
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 6.6e-19 97.8 127 43.3
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 8.6e-19 97.4 117 47.0
FAN02G2276 Fragaria x ananassa HOM05D029129 ORTHO05D029680 1.1e-18 97.1 66 83.3
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 2.5e-18 95.9 107 48.6
FAN09G3231 Fragaria x ananassa HOM05D029129 ORTHO05D029680 4.2e-18 95.1 66 81.8
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 1.6e-17 93.2 75 61.3
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 6.1e-17 91.3 91 50.5
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.4e-16 90.1 103 48.5
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 2.3e-16 89.4 77 54.5
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 3.0e-16 89.0 114 41.2
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 4.0e-16 88.6 75 61.3
FAN14G4799 Fragaria x ananassa HOM05D029129 ORTHO05D029680 8.9e-16 87.4 60 81.7
FAN14G4640 Fragaria x ananassa HOM05D029129 ORTHO05D029680 2.0e-15 86.3 60 81.7
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 2.2e-14 82.8 85 48.2
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 2.3e-11 72.8 82 48.8
FvH4_7g03660 Fragaria vesca HOM05D006057 ORTHO05D007224 3.9e-11 72.0 61 70.5
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 5.0e-11 71.6 92 50.0
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 2.8e-09 65.9 107 40.2
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 1.2e-07 60.5 135 29.6
Ah.15g097910 Amaranthus hybridus HOM05D012832 ORTHO05D019522 4.9e-06 55.1 42 59.5
Ah.15g098350 Amaranthus hybridus HOM05D012832 ORTHO05D019522 4.9e-06 55.1 42 59.5


User provided reference genes

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