Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147951 Rosa chinensis HOM05D001974 ORTHO05D001995 3.1e-93 345.1 173 100.0
RcHm_v2.0_Chr6g0276991 Rosa chinensis HOM05D001974 ORTHO05D001995 1.4e-74 283.1 167 87.4
RcHm_v2.0_Chr3g0486551 Rosa chinensis HOM05D001974 ORTHO05D001995 8.2e-30 134.4 90 75.6
FvH4_1g26490 Fragaria vesca HOM05D001974 ORTHO05D001995 1.5e-23 113.6 90 68.9
FAN10G4124 Fragaria x ananassa HOM05D001974 ORTHO05D001995 2.0e-23 113.2 90 67.8
FAN28G2208 Fragaria x ananassa HOM05D001974 ORTHO05D001995 1.3e-22 110.5 90 66.7
FAN26G2034 Fragaria x ananassa HOM05D001974 ORTHO05D001995 1.8e-21 106.7 90 65.6
Cc07_g15100 Coffea canephora HOM05D001974 ORTHO05D001995 5.5e-18 95.1 87 58.6
SGA_v2.0_scaffold80G25694 Striga asiatica HOM05D001974 ORTHO05D001995 5.5e-18 95.1 71 62.0
MD17G1281200 Malus domestica HOM05D001974 ORTHO05D001995 1.6e-17 93.6 76 61.8
Prupe.3G004400 Prunus persica HOM05D001974 ORTHO05D001995 2.7e-17 92.8 79 60.8
Haze_05115 Corylus avellana HOM05D001974 ORTHO05D001995 4.7e-17 92.0 78 59.0
Cfa004877 Carpinus fangiana HOM05D001974 ORTHO05D001995 1.8e-16 90.1 78 57.7
DCAR_002929 Daucus carota HOM05D001974 ORTHO05D001995 4.0e-16 89.0 73 58.9
COL.COLO4_23160 Corchorus olitorius HOM05D001974 ORTHO05D001995 5.2e-16 88.6 72 61.1
SalBow6G3361 Salvia bowleyana HOM05D001974 ORTHO05D001995 6.8e-16 88.2 87 56.3
HanXRQChr09g0270411 Helianthus annuus HOM05D001974 ORTHO05D001995 1.2e-15 87.4 87 54.0
Sabra02G0166000 Salix brachista HOM05D001974 ORTHO05D001995 1.2e-15 87.4 75 56.0
COL.COLO4_23159 Corchorus olitorius HOM05D001974 ORTHO05D001995 1.5e-15 87.0 72 59.7
THA.LOC104801322 Tarenaya hassleriana HOM05D001974 ORTHO05D001995 1.5e-15 87.0 72 55.6
CiPaw.07G123300 Carya illinoinensis HOM05D001974 ORTHO05D001995 2.0e-15 86.7 92 53.3
Rhsim13G0001000 Rhododendron simsii HOM05D001974 ORTHO05D001995 2.6e-15 86.3 72 63.9
CiPaw.07G123200 Carya illinoinensis HOM05D001974 ORTHO05D001995 4.4e-15 85.5 71 60.6
Gohir.A07G130600 Gossypium hirsutum HOM05D001974 ORTHO05D001995 4.4e-15 85.5 96 51.0
vmacro02371 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 4.4e-15 85.5 72 59.7
ClCG09G004670 Citrullus lanatus HOM05D001974 ORTHO05D001995 5.7e-15 85.1 70 60.0
Thecc.01G322300 Theobroma cacao HOM05D001974 ORTHO05D001995 5.7e-15 85.1 139 40.3
Migut.D00029 Erythranthe guttata HOM05D001974 ORTHO05D001995 7.5e-15 84.7 76 60.5
CSS0004499 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 9.8e-15 84.3 70 62.9
Ciclev10019102m.g Citrus clementina HOM05D001974 ORTHO05D001995 9.8e-15 84.3 72 59.7
Duzib138G0137 Durio zibethinus HOM05D001974 ORTHO05D001995 9.8e-15 84.3 87 54.0
Gorai.001G146700 Gossypium raimondii HOM05D001974 ORTHO05D001995 1.3e-14 84.0 96 50.0
HanXRQChr15g0464331 Helianthus annuus HOM05D001974 ORTHO05D001995 1.3e-14 84.0 87 52.9
QL12p034323 Quercus lobata HOM05D001974 ORTHO05D001995 1.7e-14 83.6 73 56.2
TWI59G0571 Tripterygium wilfordii HOM05D001974 ORTHO05D001995 2.2e-14 83.2 87 51.7
TAR636G2583 Trochodendron aralioides HOM05D001974 ORTHO05D001995 4.8e-14 82.0 72 56.9
Gohir.D07G135000 Gossypium hirsutum HOM05D001974 ORTHO05D001995 6.3e-14 81.6 96 49.0
Medtr1g032300 Medicago truncatula HOM05D001974 ORTHO05D001995 6.3e-14 81.6 92 46.7
Peaxi162Scf00058g00206 Petunia axillaris HOM05D001974 ORTHO05D001995 6.3e-14 81.6 87 50.6
BcaB01g02384 Brassica carinata HOM05D001974 ORTHO05D001995 8.3e-14 81.3 71 59.2
Manes.01G233000 Manihot esculenta HOM05D001974 ORTHO05D001995 8.3e-14 81.3 73 57.5
PSO017G0481 Papaver somniferum HOM05D001974 ORTHO05D001995 8.3e-14 81.3 92 45.7
PSO675G9146 Papaver somniferum HOM05D001974 ORTHO05D001995 1.1e-13 80.9 92 46.7
MELO3C023609.2 Cucumis melo HOM05D001974 ORTHO05D001995 1.4e-13 80.5 71 56.3
Psat6g045760 Pisum sativum HOM05D001974 ORTHO05D001995 1.4e-13 80.5 75 54.7
Phvul.003G019700 Phaseolus vulgaris HOM05D001974 ORTHO05D001995 1.8e-13 80.1 74 52.7
Eucgr.L00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 2.4e-13 79.7 91 46.2
Eucgr.L00886 Eucalyptus grandis HOM05D001974 ORTHO05D001995 2.4e-13 79.7 91 47.3
CsaV3_7G030440 Cucumis sativus L. HOM05D001974 ORTHO05D001995 3.1e-13 79.3 71 56.3
Glyma.07G168900 Glycine max HOM05D001974 ORTHO05D001995 3.1e-13 79.3 73 53.4
Nn3g21869 Nelumbo nucifera HOM05D001974 ORTHO05D001995 4.1e-13 79.0 72 56.9
Nitab4.5_0003324g0120 Nicotiana tabacum HOM05D001974 ORTHO05D001995 5.4e-13 78.6 87 50.6
Eucgr.H00884 Eucalyptus grandis HOM05D001974 ORTHO05D001995 9.1e-13 77.8 91 45.1
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 1.6e-12 77.0 73 54.8
MSTRG.18067 Avicennia marina HOM05D001974 ORTHO05D001995 2.0e-12 76.6 87 51.7
PGR083G1801 Punica granatum HOM05D001974 ORTHO05D001995 2.0e-12 76.6 70 51.4
SalBow6G6290 Salvia bowleyana HOM05D001974 ORTHO05D001995 2.0e-12 76.6 71 53.5
Carub.0006s3537 Capsella rubella HOM05D001974 ORTHO05D001995 2.7e-12 76.3 74 52.7
Ah.11g045770 Amaranthus hybridus HOM05D001974 ORTHO05D001995 3.5e-12 75.9 88 43.2
ATR0796G130 Amborella trichopoda HOM05D001974 ORTHO05D001995 3.5e-12 75.9 91 48.4
Sed0012789 Sechium edule HOM05D001974 ORTHO05D001995 5.9e-12 75.1 106 43.4
A03p31450 Brassica napus HOM05D001974 ORTHO05D001995 7.7e-12 74.7 71 53.5
Dinv08793 Davidia involucrata HOM05D001974 ORTHO05D001995 1.0e-11 74.3 73 52.1
VMungo1215G1833 Vigna mungo HOM05D001974 ORTHO05D001995 1.0e-11 74.3 73 50.7
BraA03t12326Z Brassica rapa HOM05D001974 ORTHO05D001995 1.3e-11 73.9 71 53.5
AT4G01870 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 1.7e-11 73.6 95 45.3
Ca_12551_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 1.7e-11 73.6 77 53.2
BcaC01g06800 Brassica carinata HOM05D001974 ORTHO05D001995 2.2e-11 73.2 71 53.5
C03p38440 Brassica napus HOM05D001974 ORTHO05D001995 2.2e-11 73.2 71 53.5
BolC3t16118H Brassica oleracea HOM05D001974 ORTHO05D001995 2.2e-11 73.2 71 53.5
MBI15_g33465_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 2.2e-11 73.2 74 50.0
Nitab4.5_0000363g0070 Nicotiana tabacum HOM05D001974 ORTHO05D001995 2.2e-11 73.2 87 49.4
Os07g0638100 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 2.2e-11 73.2 67 50.7
Sp6g01710 Schrenkiella parvula HOM05D001974 ORTHO05D001995 2.2e-11 73.2 82 47.6
AL6G51430 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 2.9e-11 72.8 74 51.4
CSS0014853 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 2.9e-11 72.8 74 56.8
AUR62011735 Chenopodium quinoa HOM05D001974 ORTHO05D001995 2.9e-11 72.8 102 40.2
CSS0034750 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 3.8e-11 72.4 74 56.8
AUR62024568 Chenopodium quinoa HOM05D001974 ORTHO05D001995 3.8e-11 72.4 94 41.5
Thhalv10029172m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.8e-11 72.4 92 46.7
Thhalv10029281m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.8e-11 72.4 92 46.7
Lj2C1212G6 Lonicera japonica HOM05D001974 ORTHO05D001995 5.0e-11 72.0 129 34.9
C03p38400 Brassica napus HOM05D001974 ORTHO05D001995 1.1e-10 70.9 71 52.1
CARHR249830 Cardamine hirsuta HOM05D001974 ORTHO05D001995 1.5e-10 70.5 89 44.9
Lsat_1_v5_gn_9_7261 Lactuca sativa HOM05D001974 ORTHO05D001995 1.5e-10 70.5 138 37.7
Aqoxy2G02566 Aquilegia oxysepala HOM05D001974 ORTHO05D001995 1.9e-10 70.1 70 50.0
Lsat_1_v5_gn_1_59561 Lactuca sativa HOM05D001974 ORTHO05D001995 1.9e-10 70.1 139 37.4
Zm00001eb328760 Zea mays HOM05D001974 ORTHO05D001995 2.5e-10 69.7 87 43.7
MBI04_g36327_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 3.2e-10 69.3 74 47.3
ATR0796G288 Amborella trichopoda HOM05D001974 ORTHO05D001995 7.2e-10 68.2 70 44.3
Lj2g0019143 Lotus japonicus HOM05D001974 ORTHO05D001995 7.2e-10 68.2 78 50.0
FAN19G0107 Fragaria x ananassa HOM05D001974 ORTHO05D001995 1.6e-09 67.0 51 66.7
Lj2g0018756 Lotus japonicus HOM05D001974 ORTHO05D001995 1.6e-09 67.0 80 48.8
Medtr1g032010 Medicago truncatula HOM05D001974 ORTHO05D001995 2.1e-09 66.6 74 52.7
Medtr1g032340 Medicago truncatula HOM05D001974 ORTHO05D001995 2.1e-09 66.6 74 52.7
Ca_12550_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 3.6e-09 65.9 67 53.7
ECA247G0945 Erigeron canadensis HOM05D001974 ORTHO05D001995 4.7e-09 65.5 68 51.5
MBI19_g32710_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 4.7e-09 65.5 70 47.1
unitig_578.g16639 Utricularia gibba HOM05D001974 ORTHO05D001995 4.7e-09 65.5 70 50.0
Glyma.09G067650 Glycine max HOM05D001974 ORTHO05D001995 6.1e-09 65.1 73 45.2
PGSC0003DMG400034369 Solanum tuberosum HOM05D001974 ORTHO05D001995 1.4e-08 63.9 87 44.8
PGSC0003DMG400005339 Solanum tuberosum HOM05D001974 ORTHO05D001995 4.0e-08 62.4 69 46.4
EL10As5g23581 Beta vulgaris HOM05D001974 ORTHO05D001995 5.2e-08 62.0 71 46.5
SEGI_38177 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 8.8e-08 61.2 57 50.9
Sopen06g004100 Solanum pennellii HOM05D001974 ORTHO05D001995 1.2e-07 60.8 61 50.8
Sopen06g003390 Solanum pennellii HOM05D001974 ORTHO05D001995 9.8e-07 57.8 80 41.2
Solyc06g008620.1 Solanum lycopersicum HOM05D001974 ORTHO05D001995 1.3e-06 57.4 80 41.2
Carub.0001s2110 Capsella rubella HOM05D001974 ORTHO05D001995 2.8e-06 56.2 59 44.1


User provided reference genes

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