Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 9.5e-77 290.0 141 100.0
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 5.4e-64 247.7 141 85.8
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.4e-64 247.7 141 85.8
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.1e-64 247.3 141 86.5
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.1e-64 247.3 141 86.5
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 9.3e-64 246.9 141 85.1
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 9.6e-61 236.9 141 84.4
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 2.1e-44 182.6 142 71.8
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 7.1e-40 167.5 144 65.3
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 3.0e-38 162.2 145 62.8
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.2e-34 150.2 140 56.4
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 2.1e-31 139.4 141 53.9
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 1.3e-28 130.2 138 52.9
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.9e-25 119.0 141 48.2
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 2.9e-25 119.0 139 48.9
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.4e-24 116.7 143 46.9
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 3.2e-24 115.5 142 45.8
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 3.2e-24 115.5 111 53.2
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 9.4e-24 114.0 97 54.6
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 9.4e-24 114.0 143 46.9
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.2e-23 113.6 142 45.1
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.2e-23 113.6 141 45.4
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.6e-23 113.2 139 46.8
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 2.1e-23 112.8 138 44.2
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 3.6e-23 112.1 140 43.6
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 7.9e-23 110.9 127 48.8
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 1.4e-22 110.2 143 46.9
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.8e-22 109.8 141 41.8
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 6.7e-22 107.8 129 42.6
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 8.8e-22 107.5 148 45.3
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.0e-21 106.3 140 45.0
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.3e-21 105.5 147 43.5
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 4.4e-21 105.1 142 46.5
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 4.4e-21 105.1 139 48.9
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 4.4e-21 105.1 137 48.2
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 5.7e-21 104.8 133 44.4
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 5.7e-21 104.8 113 49.6
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 7.4e-21 104.4 141 42.6
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 3.7e-20 102.1 138 43.5
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.7e-20 102.1 127 41.7
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 1.4e-19 100.1 129 40.3
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.4e-19 99.4 138 46.4
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.1e-19 99.0 127 40.9
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.3e-19 98.2 125 46.4
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 5.3e-19 98.2 125 46.4
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 2.0e-18 96.3 135 46.7
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.4e-18 95.5 125 45.6
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 4.5e-18 95.1 139 43.2
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.9e-18 94.7 142 45.1
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.7e-18 94.4 118 43.2
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.0e-17 94.0 121 43.8
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.3e-17 93.6 139 43.9
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 1.7e-17 93.2 142 37.3
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 2.2e-17 92.8 88 53.4
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.0e-17 91.7 121 43.8
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 8.5e-17 90.9 87 50.6
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 5.5e-16 88.2 120 39.2
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 7.2e-16 87.8 109 43.1
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 1.2e-15 87.0 114 43.9
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.6e-15 86.7 92 47.8
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.6e-15 86.7 110 42.7
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.6e-15 86.7 109 44.0
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.1e-15 86.3 77 48.1
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 2.7e-15 85.9 144 39.6
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.6e-15 85.5 139 38.8
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 7.9e-15 84.3 136 38.2
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.8e-14 83.2 141 38.3
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.8e-14 83.2 90 45.6
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 2.3e-14 82.8 144 40.3
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 3.0e-14 82.4 134 43.3
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.9e-14 82.0 113 42.5
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 3.9e-14 82.0 116 41.4
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 5.2e-14 81.6 141 39.7
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.2e-14 81.6 134 38.1
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 5.2e-14 81.6 84 44.0
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 6.7e-14 81.3 113 40.7
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 8.8e-14 80.9 57 56.1
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.1e-13 80.5 123 36.6
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 1.1e-13 80.5 79 48.1
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.1e-13 80.5 92 43.5
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.0e-13 79.7 145 40.7
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.0e-13 79.7 122 41.0
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 2.0e-13 79.7 112 40.2
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.0e-13 79.7 110 41.8
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 2.6e-13 79.3 100 40.0
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 2.6e-13 79.3 145 40.7
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.3e-13 79.0 89 48.3
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.3e-13 79.0 85 44.7
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 3.3e-13 79.0 111 43.2
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 7.4e-13 77.8 107 44.9
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 7.4e-13 77.8 124 39.5
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 7.4e-13 77.8 129 34.9
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 9.7e-13 77.4 83 44.6
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.3e-12 77.0 141 36.9
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.3e-12 77.0 141 36.9
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.7e-12 76.6 107 40.2
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 1.7e-12 76.6 87 48.3
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 2.2e-12 76.3 112 42.0
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.2e-12 76.3 65 56.9
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 2.8e-12 75.9 108 41.7
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 3.7e-12 75.5 101 44.6
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 3.7e-12 75.5 140 37.9
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 4.8e-12 75.1 129 39.5
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 4.8e-12 75.1 94 44.7
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 6.3e-12 74.7 135 37.0
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 6.3e-12 74.7 94 44.7
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.1e-11 73.9 92 44.6
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 1.4e-11 73.6 109 42.2
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.8e-11 73.2 92 45.7
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.8e-11 73.2 92 45.7
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.8e-11 73.2 92 42.4
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 2.4e-11 72.8 75 50.7
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 2.4e-11 72.8 123 36.6
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 3.1e-11 72.4 117 42.7
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 3.1e-11 72.4 112 44.6
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 7.0e-11 71.2 101 42.6
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 7.0e-11 71.2 90 44.4
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.2e-10 70.5 99 43.4
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.2e-10 70.5 99 43.4
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.2e-10 70.5 99 43.4
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 2.6e-10 69.3 107 42.1
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 3.5e-10 68.9 94 42.6
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 3.5e-10 68.9 109 45.0
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 5.9e-10 68.2 114 37.7
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 1.0e-09 67.4 107 41.1
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 1.3e-09 67.0 133 35.3
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 5.0e-09 65.1 50 54.0
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 5.0e-09 65.1 94 38.3
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 6.5e-09 64.7 72 47.2
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.1e-08 63.9 84 40.5
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 1.9e-08 63.2 110 34.5
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 2.5e-08 62.8 68 44.1
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.2e-08 62.4 151 37.1
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 2.1e-07 59.7 54 50.0
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.7e-07 59.3 129 35.7
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 3.6e-07 58.9 86 46.5
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 1.0e-06 57.4 53 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 1.4e-06 57.0 85 40.0
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.8e-06 56.6 44 50.0
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.3e-06 56.2 69 34.8
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 6.7e-06 54.7 61 49.2


User provided reference genes

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