Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 5.5e-80 300.8 143 100.0
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-69 266.2 143 85.3
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 4.4e-69 264.6 143 84.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 5.9e-50 201.1 142 66.9
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.2e-49 199.1 141 66.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 3.6e-47 191.8 141 63.8
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 1.5e-45 186.4 141 62.4
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 3.1e-43 178.7 142 61.3
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.1e-43 178.7 142 61.3
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 1.2e-42 176.8 135 63.0
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.7e-42 175.6 142 59.9
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.7e-42 175.6 142 60.6
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 2.9e-41 172.2 140 59.3
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 6.5e-41 171.0 141 57.4
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.5e-40 169.9 140 58.6
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 6.1e-39 164.5 140 55.7
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 2.3e-38 162.5 140 55.0
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 4.4e-37 158.3 109 66.1
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 9.8e-37 157.1 142 56.3
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 4.9e-36 154.8 149 54.4
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.4e-35 151.4 104 67.3
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 1.6e-34 149.8 140 52.9
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 4.5e-34 148.3 139 47.5
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.9e-34 147.9 133 51.9
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 2.3e-33 146.0 139 52.5
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.9e-33 145.6 129 53.5
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.9e-32 142.9 129 52.7
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 4.3e-32 141.7 134 49.3
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.6e-32 141.4 141 49.6
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.6e-32 141.4 141 49.6
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 7.3e-32 141.0 138 48.6
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.6e-31 139.8 142 46.5
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.6e-31 139.8 133 52.6
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 6.1e-31 137.9 141 48.2
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 6.1e-31 137.9 141 48.2
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.4e-30 136.7 134 56.7
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.4e-30 136.7 141 48.2
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.0e-30 135.6 134 49.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.0e-30 135.6 123 52.0
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 4.0e-30 135.2 137 51.1
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 6.8e-30 134.4 137 50.4
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.5e-29 133.3 139 50.4
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.5e-29 133.3 137 49.6
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 9.8e-29 130.6 126 47.6
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.3e-28 130.2 126 50.8
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 2.2e-28 129.4 125 49.6
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 6.4e-28 127.9 135 49.6
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.8e-27 126.3 144 41.7
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.4e-27 125.9 135 48.9
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-27 125.9 127 52.0
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 4.1e-27 125.2 134 45.5
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 4.1e-27 125.2 134 45.5
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 7.0e-27 124.4 135 46.7
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.6e-26 123.2 136 43.4
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 4.6e-26 121.7 137 46.7
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 4.6e-26 121.7 119 47.9
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 6.0e-26 121.3 127 48.8
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.7e-25 119.8 129 46.5
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 1.7e-25 119.8 139 44.6
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.7e-25 119.8 134 45.5
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 1.7e-25 119.8 125 49.6
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.3e-25 119.4 129 45.7
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.0e-25 119.0 126 46.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.0e-25 118.2 130 45.4
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 8.6e-25 117.5 128 45.3
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.5e-24 116.7 108 51.9
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.9e-24 116.3 125 44.0
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.3e-24 115.2 130 43.8
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 7.3e-24 114.4 132 43.9
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 7.3e-24 114.4 134 47.0
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.2e-23 111.3 142 40.8
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 6.2e-23 111.3 127 42.5
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 1.4e-22 110.2 129 45.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.8e-22 109.8 126 46.8
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 2.3e-22 109.4 136 41.2
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.2e-22 108.2 124 45.2
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 5.2e-22 108.2 131 40.5
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 5.2e-22 108.2 120 48.3
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 6.8e-22 107.8 118 43.2
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 8.9e-22 107.5 140 40.0
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 8.9e-22 107.5 131 41.2
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 8.9e-22 107.5 107 49.5
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.5e-21 106.7 131 39.7
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 1.5e-21 106.7 126 42.1
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 2.0e-21 106.3 129 39.5
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.4e-21 105.1 123 44.7
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 4.4e-21 105.1 117 44.4
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 5.8e-21 104.8 138 39.1
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 5.8e-21 104.8 121 43.8
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 5.8e-21 104.8 118 43.2
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 7.5e-21 104.4 128 39.8
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 2.2e-20 102.8 117 45.3
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 2.2e-20 102.8 132 39.4
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.2e-20 102.8 123 42.3
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 2.2e-20 102.8 123 44.7
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.7e-20 102.1 115 45.2
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 3.7e-20 102.1 121 43.0
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.7e-20 102.1 79 62.0
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 3.7e-20 102.1 134 42.5
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 6.4e-20 101.3 134 38.8
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.1e-19 100.5 119 45.4
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 1.1e-19 100.5 120 41.7
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 1.1e-19 100.5 123 43.9
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 5.4e-19 98.2 115 40.9
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 5.4e-19 98.2 123 42.3
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 9.2e-19 97.4 114 42.1
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.7e-17 93.2 108 39.8
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 3.0e-17 92.4 108 39.8
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.0e-17 91.7 112 43.8
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.0e-17 91.7 112 43.8
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 8.6e-17 90.9 125 38.4
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 1.1e-16 90.5 102 45.1
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.9e-16 89.7 119 44.5
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.3e-16 89.0 126 38.9
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 4.3e-16 88.6 116 37.9
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 5.6e-16 88.2 120 42.5
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 9.5e-16 87.4 94 46.8
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 1.2e-15 87.0 127 39.4
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 4.7e-15 85.1 81 51.9
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.7e-15 85.1 130 38.5
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 4.7e-15 85.1 102 46.1
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.1e-14 84.0 124 35.5
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.1e-14 84.0 118 41.5
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-14 83.6 130 36.9
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.8e-14 83.2 106 42.5
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 2.3e-14 82.8 88 43.2
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 5.2e-14 81.6 82 45.1
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 8.9e-14 80.9 78 51.3
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 1.5e-13 80.1 94 43.6
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.5e-13 80.1 87 48.3
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.0e-13 79.7 114 40.4
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.6e-13 79.3 114 40.4
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.4e-13 78.6 103 42.7
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 4.4e-13 78.6 110 38.2
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 9.9e-13 77.4 91 41.8
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 3.7e-12 75.5 107 35.5
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.4e-11 73.6 150 36.7
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 2.1e-10 69.7 102 33.3
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 3.3e-08 62.4 79 40.5
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 5.6e-08 61.6 88 36.4
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 1.2e-07 60.5 64 50.0
Aqoxy3G01422 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 3.6e-07 58.9 99 39.4
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.6e-07 58.9 58 46.6
RcHm_v2.0_Chr1g0342381 Rosa chinensis HOM05D000462 ORTHO05D005846 1.8e-06 56.6 37 56.8
FvH4_1g29250 Fragaria vesca HOM05D000395 ORTHO05D000088 3.1e-06 55.8 107 36.4
PSO170G5993 Papaver somniferum HOM05D000823 ORTHO05D000088 6.8e-06 54.7 107 29.9
FAN19G3192 Fragaria x ananassa HOM05D000395 ORTHO05D000088 8.9e-06 54.3 107 35.5
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 8.9e-06 54.3 93 35.5


User provided reference genes

Program Settings