Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.3e-81 305.4 147 100.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 6.5e-68 260.8 147 85.0
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.4e-51 206.5 143 65.0
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 2.5e-51 205.7 132 70.5
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 5.5e-51 204.5 143 64.3
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.1e-50 202.6 145 63.4
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.1e-50 202.6 145 63.4
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 6.7e-49 197.6 142 66.9
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.8e-47 192.2 148 62.8
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.3e-47 191.0 142 63.4
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.8e-46 189.5 142 62.7
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 7.0e-46 187.6 148 62.8
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 5.0e-44 181.4 140 61.4
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 8.5e-44 180.6 141 59.6
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.2e-43 178.7 103 82.5
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 1.0e-41 173.7 139 59.0
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 2.3e-41 172.6 143 55.9
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 5.2e-41 171.4 135 56.3
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 8.2e-39 164.1 139 56.1
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.1e-38 163.7 135 53.3
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 1.1e-38 163.7 136 55.1
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 9.1e-38 160.6 145 49.7
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.5e-35 153.3 136 54.4
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 8.0e-34 147.5 114 59.6
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.0e-33 147.1 135 48.9
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.8e-33 146.4 129 51.9
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.3e-33 146.0 135 48.9
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 4.0e-33 145.2 135 48.9
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.0e-32 142.9 135 52.6
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.5e-32 141.0 147 49.7
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.3e-31 140.2 142 50.7
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.2e-31 139.4 135 51.1
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.2e-31 139.4 110 60.0
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 2.8e-31 139.0 146 44.5
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 6.3e-31 137.9 136 47.8
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 1.8e-30 136.3 135 50.4
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.8e-30 136.3 125 51.2
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 4.1e-30 135.2 129 48.8
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 4.1e-30 135.2 144 43.8
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.1e-30 135.2 137 49.6
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 4.1e-30 135.2 137 49.6
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 9.1e-30 134.0 125 52.8
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.2e-29 133.7 126 50.8
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.7e-29 132.5 135 50.4
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 3.5e-29 132.1 133 48.1
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.5e-29 132.1 137 49.6
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.5e-29 132.1 137 49.6
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.9e-28 129.0 136 47.1
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 3.8e-28 128.6 129 49.6
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.1e-27 127.1 129 44.2
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 1.1e-27 127.1 135 44.4
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.5e-27 126.7 137 45.3
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 1.9e-27 126.3 139 46.0
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.5e-27 125.9 128 46.9
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 2.5e-27 125.9 125 48.8
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.6e-26 123.2 147 43.5
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.6e-26 123.2 133 46.6
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 4.7e-26 121.7 150 43.3
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.0e-25 120.6 141 45.4
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 1.4e-25 120.2 133 43.6
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.8e-25 119.8 146 43.8
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.0e-25 118.6 124 46.0
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 5.2e-25 118.2 127 44.9
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 6.8e-25 117.9 137 40.9
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 6.8e-25 117.9 139 44.6
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.2e-24 117.1 130 44.6
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 1.5e-24 116.7 135 45.9
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.6e-24 115.9 131 45.8
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.4e-24 115.5 136 42.6
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.4e-24 115.5 136 42.6
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 5.7e-24 114.8 125 45.6
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 9.8e-24 114.0 129 45.0
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 9.8e-24 114.0 125 44.8
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 1.3e-23 113.6 137 43.8
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.7e-23 113.2 123 46.3
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.2e-23 112.8 144 41.7
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 2.2e-23 112.8 125 42.4
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 2.8e-23 112.5 141 43.3
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.8e-23 111.7 128 42.2
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.3e-23 111.3 144 41.0
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 8.3e-23 110.9 144 42.4
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.1e-22 110.5 137 43.1
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 1.4e-22 110.2 136 41.9
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 1.8e-22 109.8 139 40.3
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 2.4e-22 109.4 123 45.5
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.1e-22 108.6 129 41.9
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 4.1e-22 108.6 108 45.4
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 7.0e-22 107.8 139 39.6
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 1.2e-21 107.1 124 46.0
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.2e-21 107.1 133 41.4
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.6e-21 106.7 141 42.6
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 2.0e-21 106.3 154 37.0
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 2.0e-21 106.3 121 46.3
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.5e-21 105.1 129 36.4
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 4.5e-21 105.1 138 40.6
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 2.3e-20 102.8 129 41.9
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 2.9e-20 102.4 120 40.0
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 5.0e-20 101.7 130 39.2
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 5.0e-20 101.7 134 46.3
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 5.0e-20 101.7 127 40.2
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 6.6e-20 101.3 129 38.8
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.9e-19 99.8 107 47.7
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 1.2e-18 97.1 139 38.1
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.6e-18 96.7 117 39.3
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 1.6e-18 96.7 120 42.5
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-18 96.7 79 60.8
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 2.8e-18 95.9 145 37.9
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.6e-18 95.5 128 36.7
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.0e-17 92.4 116 43.1
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.0e-17 92.4 116 43.1
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.2e-17 91.7 129 41.1
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.8e-17 91.3 129 42.6
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.5e-16 90.1 132 37.1
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 2.0e-16 89.7 103 44.7
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 2.6e-16 89.4 94 50.0
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 5.7e-16 88.2 93 46.2
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 9.8e-16 87.4 82 51.2
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.7e-15 86.7 88 51.1
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 2.2e-15 86.3 109 36.7
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 2.8e-15 85.9 114 41.2
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.7e-15 85.5 95 48.4
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 4.9e-15 85.1 118 39.0
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 1.1e-14 84.0 107 44.9
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.8e-14 83.2 109 35.8
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.4e-14 82.8 122 40.2
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.1e-14 82.4 124 39.5
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 5.4e-14 81.6 119 38.7
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.4e-14 81.6 122 39.3
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 2.0e-13 79.7 94 40.4
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.0e-12 77.4 126 37.3
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.3e-12 77.0 114 36.0
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.1e-11 73.9 119 38.7
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 1.9e-11 73.2 120 35.8
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 2.8e-10 69.3 64 50.0
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 2.8e-10 69.3 76 42.1
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 1.4e-09 67.0 109 34.9
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.0e-08 63.2 100 35.0
Aqoxy5G02746 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 4.4e-08 62.0 105 37.1
RcHm_v2.0_Chr1g0342381 Rosa chinensis HOM05D000462 ORTHO05D005846 1.3e-07 60.5 40 57.5
COL.COLO4_35725 Corchorus olitorius HOM05D012915 ORTHO05D012666 3.7e-07 58.9 81 38.3
Aqoxy3G01422 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.4e-06 57.0 99 36.4
PSO063G3506 Papaver somniferum HOM05D000823 ORTHO05D000088 1.9e-06 56.6 98 34.7
Sed0013260 Sechium edule HOM05D000395 ORTHO05D000088 1.9e-06 56.6 126 27.0
PSO541G4259 Papaver somniferum HOM05D000395 ORTHO05D000088 2.4e-06 56.2 103 36.9
Peaxi162Scf00016g01352 Petunia axillaris HOM05D000395 ORTHO05D000088 3.2e-06 55.8 116 31.9
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.2e-06 55.8 56 48.2
FAN06G4020 Fragaria x ananassa HOM05D000395 ORTHO05D000088 7.0e-06 54.7 117 29.9
MELO3C020923.2 Cucumis melo HOM05D000395 ORTHO05D000088 9.2e-06 54.3 125 28.0


User provided reference genes

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