Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 7.4e-73 277.3 162 100.0
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 9.0e-71 270.4 162 90.7
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-68 262.7 163 95.7
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.2e-60 235.0 167 83.2
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.6e-48 196.4 165 78.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-48 196.1 165 76.4
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.8e-48 194.9 165 78.2
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.4e-47 193.4 165 77.6
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.4e-47 193.4 165 77.6
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-46 189.1 166 75.9
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-46 189.1 166 75.9
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.0e-45 187.2 165 76.4
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-41 172.2 148 76.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.8e-32 141.7 171 61.4
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-30 136.0 177 52.5
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.8e-26 123.2 99 76.8
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.6e-22 110.2 122 59.0
RcHm_v2.0_Chr1g0314551 Rosa chinensis HOM05D004469 ORTHO05D342664 1.7e-21 106.7 107 70.1
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 2.2e-21 106.3 171 46.2
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 2.7e-19 99.4 166 44.0
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.2e-17 94.0 168 44.0
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 2.6e-17 92.8 171 50.3
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.6e-17 92.8 171 50.3
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.3e-16 88.2 171 48.5
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 4.1e-15 85.5 169 40.8
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.0e-14 83.2 165 37.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 7.7e-14 81.3 165 37.0
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 7.7e-14 81.3 159 40.3
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 8.5e-13 77.8 165 37.6
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 8.5e-13 77.8 173 37.6
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.5e-12 77.0 168 33.9
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.9e-12 76.6 164 39.0
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 4.2e-12 75.5 169 37.3
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 5.5e-12 75.1 164 34.1
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 5.5e-12 75.1 171 35.1
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 5.5e-12 75.1 171 33.9
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 5.5e-12 75.1 165 37.0
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.1e-11 73.2 164 38.4
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.1e-11 73.2 166 35.5
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 6.1e-11 71.6 169 35.5
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 8.0e-11 71.2 165 35.8
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 8.0e-11 71.2 167 35.9
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.0e-10 70.9 166 33.7
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.4e-10 70.5 164 37.2
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.4e-10 70.5 166 34.9
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.3e-10 69.7 166 36.7
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 4.0e-10 68.9 167 34.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.2e-10 68.6 165 35.2
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.2e-09 67.4 168 36.3
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.4e-09 65.9 166 31.9
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 3.4e-09 65.9 168 33.3
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 3.4e-09 65.9 166 34.3
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 5.7e-09 65.1 159 34.0
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 5.7e-09 65.1 153 32.7
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 5.7e-09 65.1 167 33.5
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 7.5e-09 64.7 167 34.1
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 7.5e-09 64.7 153 36.6
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 9.8e-09 64.3 167 32.3
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 9.8e-09 64.3 165 35.8
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 1.3e-08 63.9 167 32.3
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.3e-08 63.9 165 35.2
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.8e-08 62.8 148 33.1
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.7e-08 62.4 165 35.2
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 4.9e-08 62.0 168 33.9
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 6.3e-08 61.6 164 33.5
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 6.3e-08 61.6 169 32.5
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.3e-08 61.6 170 29.4
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 8.3e-08 61.2 166 32.5
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.4e-07 60.5 166 32.5
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.4e-07 60.5 177 33.3
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.8e-07 60.1 167 31.7
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.8e-07 60.1 170 34.7
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 9.2e-07 57.8 169 37.9
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 2.0e-06 56.6 165 32.1
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.5e-06 55.8 165 30.9
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 4.5e-06 55.5 154 33.8
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 5.9e-06 55.1 166 30.7


User provided reference genes

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