Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-47 193.0 100 100.0
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 3.0e-32 141.7 89 87.6
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 6.6e-32 140.6 88 85.2
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 6.6e-32 140.6 88 85.2
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 8.7e-32 140.2 89 86.5
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.3e-31 137.9 88 83.0
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 5.3e-29 131.0 87 79.3
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.0e-29 130.2 104 72.1
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.0e-29 130.2 104 72.1
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 1.5e-28 129.4 87 78.2
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-28 129.4 87 78.2
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-28 129.4 104 72.1
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-28 129.0 87 78.2
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 3.4e-28 128.3 87 79.3
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.9e-28 126.7 87 77.0
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.9e-27 125.2 87 75.9
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 9.3e-26 120.2 86 73.3
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 2.7e-25 118.6 86 72.1
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 2.7e-25 118.6 86 72.1
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 3.5e-25 118.2 86 73.3
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 3.5e-25 118.2 86 73.3
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 4.6e-25 117.9 84 72.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 6.0e-25 117.5 86 73.3
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 6.0e-25 117.5 88 76.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 6.0e-25 117.5 86 70.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 7.8e-25 117.1 84 71.4
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.0e-24 116.7 86 70.9
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.3e-24 115.5 84 70.2
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 3.9e-24 114.8 84 70.2
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 3.9e-24 114.8 84 70.2
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 5.1e-24 114.4 86 67.4
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 5.1e-24 114.4 86 68.6
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 5.1e-24 114.4 86 69.8
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.6e-24 114.0 86 68.6
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 8.7e-24 113.6 86 69.8
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 8.7e-24 113.6 86 68.6
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.1e-23 113.2 86 67.4
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.1e-23 113.2 86 68.6
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.5e-23 112.8 86 69.8
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.5e-23 112.8 86 69.8
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.9e-23 112.5 86 67.4
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.5e-23 112.1 86 68.6
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 2.5e-23 112.1 84 69.0
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 2.5e-23 112.1 84 67.9
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.5e-23 112.1 86 68.6
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.5e-23 112.1 86 68.6
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 3.3e-23 111.7 86 67.4
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 4.3e-23 111.3 86 68.6
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 4.3e-23 111.3 86 68.6
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.3e-23 111.3 86 66.3
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.3e-23 111.3 86 66.3
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 4.3e-23 111.3 86 66.3
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 4.3e-23 111.3 84 67.9
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 4.3e-23 111.3 86 68.6
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 5.6e-23 110.9 86 67.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 5.6e-23 110.9 86 68.6
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 5.6e-23 110.9 84 66.7
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.6e-23 110.9 86 67.4
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.6e-23 110.2 84 69.0
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 9.6e-23 110.2 84 67.9
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 9.6e-23 110.2 84 66.7
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 9.6e-23 110.2 86 66.3
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-22 109.8 98 61.2
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.3e-22 109.8 87 66.7
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.3e-22 109.8 87 66.7
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.3e-22 109.8 84 66.7
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.6e-22 109.4 87 66.7
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.6e-22 109.4 86 65.1
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.6e-22 109.4 86 66.3
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.1e-22 109.0 86 66.3
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.1e-22 109.0 86 66.3
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.8e-22 108.6 86 64.0
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 2.8e-22 108.6 86 65.1
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.8e-22 108.6 84 66.7
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 4.8e-22 107.8 86 64.0
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.2e-22 107.5 76 72.4
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.2e-22 107.5 76 72.4
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.1e-21 106.7 96 61.5
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.1e-21 106.7 87 64.4
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.4e-21 106.3 86 64.0
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.8e-21 105.9 86 61.6
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.8e-21 105.9 84 63.1
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 4.0e-21 104.8 84 64.3
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.2e-20 103.2 86 60.5
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 1.2e-20 103.2 97 60.8
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 4.5e-20 101.3 86 60.5
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.3e-19 99.8 86 60.5
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.7e-19 99.4 86 60.5
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.2e-19 99.0 86 59.3
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.9e-19 98.6 86 65.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 6.4e-19 97.4 86 58.1
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 6.4e-19 97.4 86 58.1
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 6.4e-19 97.4 51 98.0
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 8.4e-19 97.1 86 55.8
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.4e-18 96.3 86 64.0
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.2e-18 95.1 86 58.1
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.2e-18 94.7 86 57.0
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 4.2e-18 94.7 86 64.0
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 5.4e-18 94.4 86 54.7
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 5.4e-18 94.4 51 96.1
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 7.1e-18 94.0 86 55.8
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 9.3e-18 93.6 86 55.8
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 9.3e-18 93.6 86 55.8
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 9.3e-18 93.6 86 55.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.6e-17 92.8 86 55.8
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 1.6e-17 92.8 86 55.8
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 4.6e-17 91.3 86 54.7
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 4.6e-17 91.3 86 61.6
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 6.0e-17 90.9 66 71.2
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 6.0e-17 90.9 86 53.5
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.9e-17 90.5 86 52.3
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.3e-16 89.7 86 60.5
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 1.3e-16 89.7 86 54.7
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-15 86.3 65 80.0
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.9e-15 85.9 66 68.2
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 2.5e-15 85.5 86 48.8
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 2.5e-15 85.5 86 52.3
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 2.8e-14 82.0 86 51.2
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 6.2e-14 80.9 65 64.6
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 6.2e-14 80.9 85 55.3
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.1e-13 80.1 79 58.2
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.4e-13 79.0 66 63.6
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-13 78.6 46 91.3
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 4.0e-13 78.2 86 45.3
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.3e-11 73.2 98 45.9
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.9e-11 72.0 84 48.8
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-11 72.0 54 79.6
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-10 70.1 50 70.0
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 5.5e-10 67.8 46 80.4
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 9.6e-07 57.0 32 84.4


User provided reference genes

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