Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1763.0 1016 100.0
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1527.7 1020 85.5
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1471.1 1020 82.5
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1470.3 1021 81.9
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1369.4 1024 78.6
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1301.2 1061 72.5
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1293.5 1025 73.9
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1256.5 1028 72.4
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1200.3 1062 66.7
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1129.4 1067 63.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1125.2 1020 63.7
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1124.0 1057 63.9
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1119.8 1021 63.6
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1100.1 1007 64.2
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1099.3 1052 63.2
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1094.7 1066 62.1
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1093.2 1022 62.7
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1082.0 1033 61.2
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1079.7 1031 60.5
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 7.0e-312 1073.5 1031 62.9
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 7.0e-312 1073.5 1029 64.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 2.1e-311 1072.4 1074 60.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 3.1e-310 1068.5 1027 61.7
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 3.4e-309 1065.1 1026 62.2
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 9.9e-309 1063.5 1032 62.5
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.3e-305 1053.1 1030 61.3
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.1e-304 1050.0 1050 59.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 4.3e-304 1048.1 1018 62.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.3e-304 1048.1 1046 59.5
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.8e-303 1045.4 1050 59.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 8.1e-303 1043.9 1026 60.3
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.8e-302 1042.7 1012 62.4
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 2.0e-301 1039.3 905 66.5
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.7e-300 1036.2 1002 61.1
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 3.8e-300 1035.0 1203 55.8
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 8.4e-300 1033.9 1047 60.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 3.2e-299 1031.9 1043 60.5
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.2e-298 1030.0 1009 60.1
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 4.6e-298 1028.1 1023 61.5
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 4.6e-298 1028.1 1061 60.7
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 3.9e-297 1025.0 1016 61.4
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 7.4e-296 1020.8 1047 60.2
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 6.2e-295 1017.7 1038 60.7
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.8e-294 1016.1 1026 59.9
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.1e-294 1015.4 1070 56.8
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.0e-294 1015.0 1007 58.9
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 9.0e-294 1013.8 1047 58.3
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 3.4e-293 1011.9 1039 58.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.6e-290 1003.0 978 59.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 3.5e-290 1001.9 1020 59.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 6.7e-289 997.7 1060 60.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 6.7e-289 997.7 1041 60.2
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 7.4e-288 994.2 1009 58.8
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 6.9e-286 987.6 1022 59.8
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 4.5e-285 984.9 1062 56.8
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 2.9e-284 982.2 1007 61.9
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 8.5e-284 980.7 1010 57.3
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 5.5e-283 978.0 1022 58.2
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.6e-282 974.9 1039 59.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.3e-281 973.4 1061 56.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.8e-281 973.0 1023 57.3
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 3.9e-281 971.8 1029 58.1
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 6.7e-281 971.1 1022 57.8
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.9e-280 969.5 1011 59.2
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.7e-279 965.3 921 59.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 8.2e-279 964.1 1019 57.6
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 9.0e-278 960.7 1029 54.5
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.2e-277 960.3 1027 58.5
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 4.2e-275 951.8 961 59.0
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.7e-274 949.1 1055 57.3
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 3.0e-273 945.7 1015 55.6
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.0e-272 943.0 1019 57.7
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.4e-270 936.0 1031 54.1
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 6.9e-270 934.5 1041 55.9
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.9e-268 929.1 1039 55.9
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 6.5e-268 927.9 966 58.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.1e-267 927.2 880 61.2
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 2.5e-267 926.0 1048 55.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.0e-264 916.4 606 83.2
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 9.7e-264 914.1 1018 55.0
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.8e-262 909.8 1015 55.6
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 5.3e-262 908.3 905 59.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.0e-260 904.0 1016 56.3
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.3e-260 903.7 1058 54.7
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 9.4e-259 897.5 1040 54.1
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 3.6e-258 895.6 862 59.7
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.8e-257 893.3 882 60.8
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 9.1e-254 880.9 1007 53.8
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 5.5e-251 871.7 953 57.1
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 9.4e-251 870.9 1010 53.1
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.2e-250 870.5 1029 53.6
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 4.4e-248 862.1 1003 52.3
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.5e-248 861.3 1039 52.8
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.7e-244 850.1 836 58.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.7e-242 842.0 855 57.9
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.4e-240 835.5 803 60.3
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.2e-234 817.4 1019 50.7
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.1e-234 816.6 699 68.2
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.4e-233 813.9 1071 48.7
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.0e-232 810.1 1017 51.6
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.2e-222 776.2 620 68.1
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.6e-218 763.8 1048 48.4
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 3.6e-202 709.5 1022 48.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 9.3e-190 668.3 588 63.3
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.1e-186 657.1 985 47.2
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 6.2e-186 655.6 974 42.9
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.7e-183 647.5 752 49.1
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 2.0e-176 624.0 866 45.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.8e-162 577.0 579 60.3
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.7e-162 576.6 870 44.1
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 5.0e-159 566.2 555 58.2
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.7e-154 551.2 917 39.9
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.0e-151 542.0 634 51.1
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.0e-148 531.9 732 48.4
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.7e-146 524.6 499 61.3
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 7.7e-136 489.2 839 37.3
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 3.1e-129 467.2 360 70.3
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 9.2e-105 386.0 860 34.5
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.7e-82 312.0 610 37.2
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 2.9e-82 311.2 629 38.5
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 5.4e-81 307.0 360 51.4
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-76 292.7 179 84.9
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 2.6e-75 288.1 589 41.8
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.9e-66 258.1 307 50.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 5.1e-63 247.3 937 29.3
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 4.8e-61 240.7 217 62.7
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.2e-57 227.6 242 58.3
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 8.2e-53 213.4 252 60.3
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 7.0e-36 157.1 199 54.8
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 7.7e-35 153.7 160 59.4
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.4e-33 149.4 110 71.8
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.0e-31 143.3 160 53.1
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.0e-31 143.3 224 42.4
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 2.2e-26 125.6 132 56.1
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 3.2e-25 121.7 218 48.2
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.3e-21 109.8 202 47.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.4e-20 106.3 57 87.7
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 2.7e-19 102.1 51 94.1
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 7.7e-19 100.5 134 44.0
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.2e-16 93.2 81 58.0
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 2.1e-08 65.9 48 70.8
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 2.8e-08 65.5 42 71.4
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 2.8e-08 65.5 42 71.4
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 3.6e-08 65.1 54 61.1
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 6.1e-08 64.3 48 68.8
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 8.0e-08 63.9 46 71.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 1.0e-07 63.5 42 69.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 1.0e-07 63.5 42 69.0
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.0e-07 63.5 130 42.3
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 1.8e-07 62.8 60 61.7
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.3e-07 62.4 42 66.7
Psat3g037200 Pisum sativum HOM05D001007 ORTHO05D012393 6.8e-07 60.8 47 66.0
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 6.8e-07 60.8 101 61.4


User provided reference genes

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