Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1921.0 989 100.0
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1858.2 990 96.4
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1855.9 990 96.5
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1772.3 990 90.9
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1711.4 990 87.5
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1709.9 990 90.2
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1702.2 918 95.5
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1700.3 990 86.6
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1587.8 990 80.8
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1557.0 990 79.4
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1547.7 993 78.2
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1540.8 990 78.3
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1537.3 990 79.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1536.9 969 80.7
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1527.3 993 78.5
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1522.3 992 77.4
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1521.5 990 76.9
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1510.0 990 76.8
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1505.7 991 76.8
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1505.0 990 77.1
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1502.3 979 76.1
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1501.5 991 75.5
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1501.5 991 75.4
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1500.7 979 75.6
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1500.7 989 77.9
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1498.4 985 77.6
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1498.4 991 76.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1497.3 990 75.2
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1496.5 1004 75.8
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1495.3 1015 75.9
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1494.2 990 75.7
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1490.3 991 76.1
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1488.0 991 76.3
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1486.1 990 76.3
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1480.7 990 74.9
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1473.8 991 75.5
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1473.0 992 74.0
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1471.4 991 75.2
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1470.3 992 74.9
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1469.1 992 75.3
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1468.0 986 74.1
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1464.9 990 74.9
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1464.5 1074 69.7
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 969 76.6
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1461.8 995 74.1
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 991 74.1
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 984 74.5
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 994 74.6
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1456.4 990 73.9
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1456.4 991 73.5
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1448.7 985 74.5
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1446.0 990 73.1
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1445.3 990 74.4
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1444.1 989 74.1
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1441.0 990 72.9
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1439.1 985 73.4
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1439.1 990 74.1
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 960 74.1
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1430.6 990 72.5
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1426.8 992 73.3
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1425.2 986 72.5
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1424.8 993 72.5
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1423.3 985 72.6
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1419.1 990 73.9
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1417.5 991 73.6
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1415.6 992 73.2
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1414.4 992 72.8
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1410.6 963 73.8
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1409.4 995 71.7
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1406.7 993 72.2
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1404.4 993 72.3
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 997 73.5
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1403.3 990 71.5
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1402.9 985 71.4
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 991 73.1
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1396.7 962 74.1
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1382.5 985 70.6
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1379.4 994 71.0
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1379.0 897 77.3
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1378.6 992 70.5
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1372.8 985 70.8
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1372.5 985 70.8
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1366.7 1024 69.1
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1365.1 1004 69.1
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1362.4 962 72.8
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1359.7 993 71.2
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1355.5 993 70.0
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1353.2 980 70.1
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1353.2 980 70.1
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1346.3 988 69.5
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1343.2 988 69.2
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1339.7 987 69.3
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1333.9 988 69.3
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1325.8 998 68.0
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1317.8 992 68.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1308.5 990 68.0
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1280.8 939 70.2
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1261.5 971 65.3
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1247.3 963 66.9
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1206.4 911 69.4
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1190.6 991 60.1
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1183.3 862 71.6
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1124.8 998 60.6
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1120.9 607 94.9
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1077.4 724 77.1
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 4.5e-298 1028.1 992 53.8
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 3.9e-294 1015.0 911 60.0
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 8.5e-289 997.3 1001 53.7
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.5e-288 995.7 1000 53.3
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 1.7e-281 973.0 997 51.2
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 3.6e-279 965.3 1000 50.0
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 6.7e-278 961.1 1001 52.0
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 7.0e-275 951.0 611 78.4
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.8e-270 936.4 598 78.8
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.1e-264 917.1 842 58.0
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.1e-255 886.3 744 62.0
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 7.5e-245 851.3 982 46.2
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 6.4e-236 821.6 807 53.2
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 1.5e-208 730.7 1080 38.1
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 6.4e-204 715.3 883 43.5
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 1.7e-180 637.5 427 75.2
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 2.1e-146 524.2 315 81.6
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 8.0e-146 522.3 304 84.2
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.1e-139 501.9 356 70.5
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 9.9e-120 435.6 1188 29.0
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.3e-91 340.5 264 63.3
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.3e-91 340.5 264 63.3
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.1e-73 282.7 1075 26.2
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.1e-53 215.3 240 47.1
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 2.9e-39 168.3 951 22.5
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.0e-31 143.3 122 63.9
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 8.0e-29 133.7 145 51.0
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 9.2e-25 120.2 144 48.6
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 2.7e-24 118.6 109 53.2
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 3.1e-20 105.1 85 62.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.3e-15 89.0 76 61.8
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 5.1e-07 61.2 49 57.1


User provided reference genes

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