Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 3.4e-65 251.5 126 100.0
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-57 226.5 139 84.9
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.5e-54 214.9 126 89.7
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.9e-54 214.2 126 88.9
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.6e-53 210.3 134 82.8
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.5e-52 208.8 134 82.8
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.5e-52 208.8 134 82.8
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.5e-52 208.8 134 82.8
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 5.6e-52 207.6 126 86.5
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 9.5e-44 180.3 130 75.4
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 4.7e-43 177.9 116 81.9
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 6.2e-43 177.6 116 79.3
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 8.1e-43 177.2 119 78.2
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.1e-42 176.8 116 81.9
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.4e-42 176.4 116 81.0
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 5.2e-42 174.5 116 79.3
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 5.2e-42 174.5 113 81.4
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 5.2e-42 174.5 113 81.4
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.9e-42 173.7 112 83.0
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 8.9e-42 173.7 116 80.2
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 8.9e-42 173.7 116 79.3
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 8.9e-42 173.7 116 79.3
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.2e-41 173.3 124 74.2
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.2e-41 173.3 116 79.3
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.5e-41 172.9 116 77.6
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.5e-41 172.9 116 78.4
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.0e-41 172.6 116 78.4
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.0e-41 172.6 116 80.2
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.4e-41 171.8 116 79.3
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 3.4e-41 171.8 116 77.6
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 3.4e-41 171.8 116 77.6
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.4e-41 171.4 116 77.6
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 4.4e-41 171.4 113 80.5
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 4.4e-41 171.4 119 76.5
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 5.8e-41 171.0 116 77.6
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 5.8e-41 171.0 116 77.6
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 5.8e-41 171.0 116 78.4
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 7.5e-41 170.6 117 75.2
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 9.8e-41 170.2 116 75.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 9.8e-41 170.2 116 75.9
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 9.8e-41 170.2 116 79.3
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.3e-40 169.9 116 77.6
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.3e-40 169.9 116 77.6
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.3e-40 169.9 116 77.6
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.7e-40 169.5 116 76.7
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.2e-40 169.1 116 77.6
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.2e-40 169.1 116 77.6
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 2.9e-40 168.7 116 76.7
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 3.7e-40 168.3 116 76.7
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.7e-40 168.3 116 77.6
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 3.7e-40 168.3 120 74.2
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.9e-40 167.9 116 76.7
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 6.4e-40 167.5 116 75.0
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 6.4e-40 167.5 114 78.9
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 6.4e-40 167.5 95 87.4
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 6.4e-40 167.5 116 77.6
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 8.3e-40 167.2 116 75.9
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.1e-39 166.8 116 75.9
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-39 166.8 116 75.9
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-39 166.8 116 75.9
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-39 166.8 116 75.9
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-39 166.8 116 75.9
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.1e-39 166.8 116 75.9
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.4e-39 166.4 116 75.9
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.9e-39 166.0 113 77.0
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.9e-39 166.0 112 80.4
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.9e-39 166.0 146 63.7
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 2.4e-39 165.6 116 76.7
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 2.4e-39 165.6 116 74.1
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-39 165.6 116 75.0
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.4e-39 165.6 116 75.0
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.4e-39 165.6 116 75.0
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 2.4e-39 165.6 121 71.1
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 3.2e-39 165.2 116 74.1
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 3.2e-39 165.2 114 78.1
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 7.1e-39 164.1 119 73.9
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 7.1e-39 164.1 113 76.1
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 9.2e-39 163.7 113 77.0
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 9.2e-39 163.7 116 74.1
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 9.2e-39 163.7 113 76.1
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 9.2e-39 163.7 113 76.1
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 9.2e-39 163.7 113 77.0
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 9.2e-39 163.7 113 76.1
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 9.2e-39 163.7 116 75.0
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 1.2e-38 163.3 115 75.7
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 1.2e-38 163.3 115 75.7
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.6e-38 162.9 95 86.3
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.6e-38 162.9 114 77.2
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.7e-38 162.2 113 75.2
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.7e-38 162.2 113 75.2
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 2.7e-38 162.2 113 75.2
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 2.7e-38 162.2 113 75.2
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 2.7e-38 162.2 113 75.2
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.7e-38 162.2 114 77.2
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 2.7e-38 162.2 113 74.3
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.6e-38 161.4 113 76.1
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 4.6e-38 161.4 116 71.6
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 4.6e-38 161.4 95 84.2
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 6.0e-38 161.0 113 77.0
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 6.0e-38 161.0 117 71.8
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.0e-38 161.0 95 85.3
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.0e-37 160.2 113 74.3
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.0e-37 160.2 113 75.2
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.0e-37 160.2 116 74.1
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.3e-37 159.8 111 77.5
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.7e-37 159.5 95 84.2
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.7e-37 159.5 118 71.2
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.3e-37 159.1 110 77.3
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 2.3e-37 159.1 113 74.3
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 2.3e-37 159.1 116 74.1
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 3.9e-37 158.3 123 70.7
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 3.9e-37 158.3 121 70.2
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 5.1e-37 157.9 113 74.3
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 5.1e-37 157.9 113 74.3
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 5.1e-37 157.9 113 74.3
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.6e-37 157.5 121 70.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.6e-37 157.5 121 70.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.5e-36 155.6 113 71.7
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 5.6e-36 154.5 109 75.2
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 9.5e-36 153.7 111 72.1
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.2e-35 153.3 116 69.0
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 2.8e-35 152.1 111 71.2
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.4e-34 149.8 95 77.9
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 4.0e-34 148.3 108 72.2
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.0e-33 146.0 116 65.5
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 4.4e-33 144.8 136 61.8
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 4.9e-32 141.4 145 56.6
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 3.2e-31 138.7 95 72.6
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 5.4e-31 137.9 124 58.9
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.2e-30 136.7 138 58.0
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.6e-30 136.3 110 66.4
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.1e-30 136.0 76 88.2
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 3.9e-29 131.7 130 60.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 8.9e-26 120.6 116 52.6
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 9.3e-23 110.5 113 54.0
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.2e-22 110.2 64 84.4
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.1e-19 99.4 110 52.7
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 2.4e-18 95.9 55 87.3
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 9.0e-18 94.0 75 72.0
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.9e-16 89.0 70 68.6
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 6.4e-16 87.8 105 45.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 3.2e-15 85.5 50 84.0
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.6e-14 83.2 109 46.8
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.6e-14 83.2 61 67.2
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.9e-13 78.6 92 48.9
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 4.3e-12 75.1 86 51.2
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 1.3e-11 73.6 74 55.4
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.9e-10 67.8 34 91.2
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.4e-09 65.5 57 63.2
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.7e-08 63.2 71 50.7
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.4e-07 60.1 67 52.2
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.9e-07 59.7 50 58.0
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 4.2e-07 58.5 34 73.5
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.2e-07 58.5 51 62.7
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 6.0e-06 54.7 110 33.6
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 6.0e-06 54.7 56 53.6


User provided reference genes

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