Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 1.6e-166 589.3 303 100.0
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 9.0e-157 557.0 303 95.0
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 5.8e-156 554.3 303 94.7
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 9.0e-141 503.8 280 93.9
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 4.6e-129 464.9 304 81.6
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 5.9e-124 448.0 305 79.3
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 5.5e-114 414.8 304 72.4
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 2.1e-113 412.9 306 71.6
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.6e-111 406.0 303 72.6
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 2.2e-110 402.9 304 69.4
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 2.4e-109 399.4 310 68.4
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 3.5e-108 395.6 249 78.7
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 6.5e-107 391.3 298 68.1
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.5e-106 390.2 304 67.4
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.5e-106 389.4 304 67.4
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 4.2e-106 388.7 301 67.1
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 4.2e-106 388.7 302 66.9
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 5.5e-106 388.3 310 66.1
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 5.5e-106 388.3 304 68.4
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 1.2e-105 387.1 261 73.9
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.6e-105 386.7 354 59.9
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 1.6e-105 386.7 303 67.3
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.4e-104 383.6 302 67.9
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 3.0e-104 382.5 299 66.6
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 4.0e-104 382.1 302 66.9
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 8.8e-104 380.9 296 68.6
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 8.8e-104 380.9 303 64.7
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 2.0e-103 379.8 294 68.7
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 9.8e-103 377.5 299 65.2
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.3e-102 377.1 299 65.9
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 1.3e-102 377.1 303 64.7
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.7e-102 376.7 300 65.7
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 1.7e-102 376.7 296 65.2
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 2.2e-102 376.3 256 73.4
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 3.7e-102 375.6 261 71.6
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 3.1e-101 372.5 258 72.5
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 4.1e-101 372.1 264 72.3
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 7.0e-101 371.3 311 64.0
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 3.5e-100 369.0 258 70.2
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 5.9e-100 368.2 260 71.9
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.7e-99 366.7 285 63.9
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 2.3e-99 366.3 266 69.9
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 2.9e-99 365.9 310 61.9
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 2.5e-98 362.8 247 73.7
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 1.2e-97 360.5 259 69.5
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 2.1e-97 359.8 261 69.0
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 6.1e-97 358.2 306 61.4
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.0e-96 357.5 288 62.8
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 2.3e-96 356.3 357 57.1
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 4.0e-96 355.5 304 62.2
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 4.0e-96 355.5 297 62.3
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.2e-95 354.0 263 66.9
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 7.5e-95 351.3 314 58.6
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 2.8e-94 349.4 278 63.7
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 2.4e-93 346.3 263 67.7
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 3.1e-93 345.9 243 71.6
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 9.2e-93 344.4 248 69.0
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 1.2e-92 344.0 269 61.7
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.2e-92 344.0 311 59.5
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 1.0e-91 340.9 298 61.1
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 2.9e-91 339.3 262 66.0
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.9e-91 339.3 264 65.2
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 1.1e-90 337.4 259 68.3
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 4.3e-90 335.5 304 63.2
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 5.6e-90 335.1 298 59.7
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 5.6e-90 335.1 304 60.9
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 3.6e-89 332.4 293 59.0
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 2.3e-88 329.7 308 57.5
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 2.3e-88 329.7 260 64.2
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 5.2e-88 328.6 263 63.1
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.2e-87 327.4 251 64.9
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.0e-87 326.6 248 65.3
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.6e-87 326.2 283 60.8
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 4.4e-87 325.5 305 59.0
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.3e-86 323.9 286 58.7
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 6.4e-86 321.6 296 60.1
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.4e-85 320.5 242 69.8
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 5.4e-85 318.5 325 54.2
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 5.4e-85 318.5 325 54.2
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 7.0e-85 318.2 307 57.3
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 7.0e-85 318.2 307 57.3
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 4.6e-84 315.5 307 57.3
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 6.6e-83 311.6 311 56.6
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 6.6e-83 311.6 263 60.5
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.5e-82 310.5 303 57.1
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.2e-81 307.4 303 56.8
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.1e-81 306.6 258 60.9
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.0e-79 300.1 163 94.5
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.4e-72 277.3 195 70.3
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 2.3e-72 276.6 193 71.0
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.2e-71 274.2 262 55.7
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 7.5e-71 271.6 217 64.5
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 5.6e-66 255.4 299 50.8
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 2.8e-65 253.1 217 60.8
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.4e-64 250.8 262 50.8
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.2e-60 237.7 171 69.6
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 5.6e-58 228.8 191 59.2
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 4.9e-54 215.7 210 57.6
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 4.2e-53 212.6 146 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.9e-50 203.8 204 55.4
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 1.6e-49 200.7 260 42.3
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 4.8e-41 172.6 191 55.0
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 2.5e-34 150.2 133 56.4
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.4e-31 139.8 148 50.7
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.1e-19 99.4 190 35.8
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 2.5e-18 97.1 241 32.0
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 2.5e-18 97.1 56 83.9
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 4.3e-18 96.3 269 33.5
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 1.7e-17 94.4 56 83.9
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.8e-16 90.9 100 47.0
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 1.1e-10 71.6 203 27.6
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.2e-07 61.6 253 27.7
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.5e-07 61.2 253 27.3
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.4e-07 60.1 54 44.4
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 5.9e-07 59.3 269 27.1
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 2.9e-06 57.0 241 27.0
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 3.8e-06 56.6 266 25.6
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 3.8e-06 56.6 253 26.9
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 8.5e-06 55.5 284 23.9
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 8.5e-06 55.5 290 24.5
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 8.5e-06 55.5 241 26.1


User provided reference genes

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