Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 1.9e-34 148.7 77 100.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 8.4e-27 123.2 79 82.3
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.4e-27 123.2 79 82.3
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.4e-27 123.2 79 82.3
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.9e-26 122.1 79 81.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 5.7e-23 110.5 82 76.8
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 2.0e-20 102.1 69 76.8
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-15 86.3 63 68.3
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 9.7e-15 83.2 60 63.3
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.7e-14 81.3 61 67.2
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.8e-13 79.0 63 63.5
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.4e-13 78.6 71 62.0
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.1e-13 77.8 60 68.3
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-12 76.3 74 56.8
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.6e-12 75.1 58 58.6
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 5.9e-12 73.9 59 67.8
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 1.0e-11 73.2 63 61.9
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.0e-11 73.2 76 53.9
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.3e-11 72.8 71 56.3
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.3e-11 72.8 79 58.2
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.7e-11 72.4 56 62.5
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.2e-11 72.0 76 50.0
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 2.2e-11 72.0 63 57.1
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 2.2e-11 72.0 60 66.7
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 2.9e-11 71.6 69 55.1
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 2.9e-11 71.6 47 78.7
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.9e-11 71.6 52 73.1
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.8e-11 71.2 50 68.0
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 5.0e-11 70.9 50 66.0
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 6.5e-11 70.5 52 63.5
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.5e-11 70.5 58 65.5
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 6.5e-11 70.5 52 67.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 8.5e-11 70.1 60 55.0
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 8.5e-11 70.1 60 55.0
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 1.1e-10 69.7 62 56.5
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.1e-10 69.7 59 61.0
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 1.1e-10 69.7 58 67.2
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.4e-10 69.3 47 70.2
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.4e-10 69.3 50 68.0
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.9e-10 68.9 52 63.5
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.5e-10 68.6 53 71.7
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.5e-10 68.6 63 54.0
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 3.2e-10 68.2 57 63.2
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 3.2e-10 68.2 47 72.3
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.2e-10 67.8 57 68.4
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 4.2e-10 67.8 68 55.9
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 4.2e-10 67.8 68 55.9
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 4.2e-10 67.8 59 64.4
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 5.5e-10 67.4 67 58.2
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 7.2e-10 67.0 63 55.6
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.2e-10 67.0 65 55.4
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 9.4e-10 66.6 50 66.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 9.4e-10 66.6 67 58.2
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 9.4e-10 66.6 91 45.1
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 9.4e-10 66.6 59 64.4
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.6e-09 65.9 63 54.0
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.1e-09 65.5 76 52.6
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.1e-09 65.5 50 62.0
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.7e-09 65.1 66 53.0
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.6e-09 64.7 50 66.0
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 4.6e-09 64.3 68 51.5
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 4.6e-09 64.3 68 51.5
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 4.6e-09 64.3 61 52.5
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.6e-09 64.3 47 66.0
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.6e-09 64.3 61 55.7
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 6.1e-09 63.9 60 56.7
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.0e-08 63.2 61 57.4
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.0e-08 63.2 61 57.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.0e-08 63.2 61 57.4
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.0e-08 63.2 61 57.4
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.0e-08 63.2 61 57.4
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.4e-08 62.8 65 53.8
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.4e-08 62.8 65 53.8
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.4e-08 62.8 62 53.2
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 1.8e-08 62.4 60 55.0
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.8e-08 62.4 52 59.6
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 1.8e-08 62.4 60 55.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.8e-08 62.4 52 59.6
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.3e-08 62.0 75 46.7
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.3e-08 62.0 64 54.7
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.3e-08 62.0 61 57.4
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.3e-08 62.0 63 54.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 3.0e-08 61.6 71 49.3
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 3.0e-08 61.6 58 58.6
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 3.0e-08 61.6 64 50.0
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.0e-08 61.6 47 61.7
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.0e-08 61.6 47 61.7
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 3.9e-08 61.2 60 55.0
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 5.1e-08 60.8 77 50.6
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 5.1e-08 60.8 73 50.7
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 6.7e-08 60.5 51 58.8
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 8.8e-08 60.1 69 50.7
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 8.8e-08 60.1 76 50.0
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.1e-07 59.7 63 49.2
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.1e-07 59.7 75 50.7
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.1e-07 59.7 76 50.0
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-07 59.3 74 45.9
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-07 59.3 74 45.9
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 1.5e-07 59.3 74 45.9
Carub.0001s1726 Capsella rubella HOM05D003238 ORTHO05D003571 1.5e-07 59.3 75 52.0
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 2.0e-07 58.9 60 53.3
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 2.0e-07 58.9 60 53.3
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 2.0e-07 58.9 60 53.3
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.0e-07 58.9 53 56.6
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.0e-07 58.9 64 57.8
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 2.0e-07 58.9 74 47.3
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 2.6e-07 58.5 74 44.6
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 2.6e-07 58.5 74 44.6
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 4.4e-07 57.8 65 52.3
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 4.4e-07 57.8 73 52.1
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 9.7e-07 56.6 61 52.5
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.7e-06 55.8 96 42.7
BcaB03g15008 Brassica carinata HOM05D003238 ORTHO05D003571 3.7e-06 54.7 50 52.0


User provided reference genes

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