Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-72 276.6 137 100.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.1e-65 252.3 146 88.4
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-64 249.2 151 84.8
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 9.9e-63 243.4 149 83.2
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 9.3e-53 210.3 161 69.6
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.7e-52 208.8 151 73.5
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-52 208.8 150 74.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.6e-52 208.0 150 74.0
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.6e-52 208.0 150 74.0
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.6e-52 208.0 151 73.5
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.3e-51 206.5 149 71.1
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.8e-51 206.1 150 72.7
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.0e-51 205.3 149 68.5
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 8.7e-51 203.8 149 69.8
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 8.7e-51 203.8 131 81.7
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.1e-50 203.4 149 70.5
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 4.3e-50 201.4 151 66.9
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 5.7e-50 201.1 127 81.9
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 7.4e-50 200.7 156 66.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 9.7e-50 200.3 152 67.8
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.6e-49 199.5 147 66.0
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.8e-49 198.7 151 69.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 6.3e-49 197.6 151 68.9
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 6.3e-49 197.6 148 66.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.2e-49 197.2 150 67.3
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 8.2e-49 197.2 155 67.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-48 196.8 152 67.1
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-48 196.8 149 65.8
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.4e-48 196.4 142 70.4
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 3.1e-48 195.3 149 69.1
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 4.1e-48 194.9 147 68.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 4.1e-48 194.9 140 70.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 6.9e-48 194.1 149 64.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.9e-48 194.1 140 69.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 9.0e-48 193.7 140 68.6
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 9.0e-48 193.7 131 74.0
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.5e-47 193.0 150 66.0
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.0e-47 192.6 151 64.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.6e-47 192.2 151 63.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.6e-47 192.2 140 68.6
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.6e-47 192.2 152 64.5
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 3.4e-47 191.8 141 67.4
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 4.5e-47 191.4 145 64.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.7e-46 189.5 151 64.2
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 3.8e-46 188.3 139 67.6
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 6.5e-46 187.6 142 66.2
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 8.5e-46 187.2 151 62.9
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.5e-46 187.2 138 66.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 8.5e-46 187.2 142 65.5
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.5e-45 185.7 138 66.7
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 4.2e-45 184.9 142 66.2
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 7.2e-45 184.1 145 66.2
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 7.2e-45 184.1 158 60.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.4e-43 179.9 152 61.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.8e-43 179.5 160 61.9
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.8e-43 179.5 138 64.5
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 6.7e-43 177.6 141 65.2
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.5e-42 176.4 175 55.4
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.5e-42 175.6 142 58.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 9.7e-42 173.7 158 58.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-41 172.6 141 63.1
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-40 170.2 141 62.4
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.1e-40 170.2 151 63.6
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.1e-40 168.7 141 61.7
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 5.9e-39 164.5 156 59.6
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 5.9e-39 164.5 175 52.6
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.7e-39 164.1 140 61.4
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.0e-38 163.7 143 56.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.3e-38 163.3 138 61.6
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.7e-38 162.9 149 59.1
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-38 162.5 142 58.5
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 2.2e-38 162.5 136 60.3
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.2e-38 162.5 143 55.2
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 2.2e-38 162.5 140 58.6
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.9e-38 162.2 140 55.0
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.9e-38 162.2 143 55.9
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.9e-37 159.5 204 47.5
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 7.9e-36 154.1 127 67.7
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 5.7e-34 147.9 131 61.8
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.2e-33 146.0 137 49.6
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.8e-33 145.6 140 57.1
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.8e-33 144.8 137 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 8.2e-33 144.1 137 48.9
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.8e-32 142.9 105 70.5
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 7.0e-32 141.0 144 51.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.5e-31 139.8 107 64.5
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.0e-31 139.4 122 59.0
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.5e-31 138.3 142 50.7
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 8.5e-30 134.0 98 69.4
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.9e-29 132.9 116 59.5
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.6e-28 129.8 134 54.5
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.6e-28 128.6 142 47.2
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 6.1e-28 127.9 139 44.6
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 8.8e-27 124.0 99 60.6
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.5e-26 123.2 141 46.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-26 122.9 80 77.5
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.3e-26 122.1 145 45.5
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 5.7e-26 121.3 160 43.1
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 7.4e-26 120.9 161 42.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 7.4e-26 120.9 148 43.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 9.7e-26 120.6 157 43.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.2e-25 119.4 161 42.9
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.2e-25 119.4 139 45.3
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 4.8e-25 118.2 141 44.7
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 4.8e-25 118.2 156 43.6
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.8e-25 118.2 92 64.1
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.8e-24 116.3 161 41.6
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.1e-24 115.2 116 53.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 7.0e-24 114.4 161 42.2
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.6e-23 112.5 118 51.7
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.9e-23 111.3 155 41.3
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.9e-23 111.3 166 43.4
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 6.5e-22 107.8 152 41.4
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.5e-21 106.7 139 41.0
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.5e-21 106.7 139 41.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 3.2e-21 105.5 139 41.0
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.3e-19 99.4 135 40.0
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.3e-19 99.4 146 38.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 4.0e-19 98.6 148 37.8
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.2e-19 98.2 136 40.4
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.6e-18 95.9 143 39.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 5.7e-18 94.7 105 46.7
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 7.5e-18 94.4 151 38.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 7.5e-18 94.4 112 49.1
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-17 93.6 136 39.7
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.3e-17 93.6 153 37.9
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.7e-17 93.2 136 36.8
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 2.2e-17 92.8 154 35.7
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.8e-17 92.4 152 37.5
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.8e-17 92.4 83 61.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.4e-16 90.1 136 35.3
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 7.0e-16 87.8 91 48.4
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 9.1e-16 87.4 46 93.5
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.3e-14 83.6 146 31.5
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 3.2e-13 79.0 128 39.8
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 9.4e-13 77.4 81 50.6
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 3.6e-12 75.5 124 34.7
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.5e-10 70.1 66 54.5
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 7.5e-10 67.8 97 41.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.6e-07 60.1 141 26.2
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.5e-07 58.9 55 50.9
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 1.0e-06 57.4 42 57.1


User provided reference genes

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