Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 5.3e-78 294.3 148 100.0
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 9.7e-72 273.5 148 92.6
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 9.7e-72 273.5 148 92.6
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.2e-71 270.4 148 91.2
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.1e-70 268.1 148 91.2
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 2.8e-63 245.4 148 84.5
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 5.3e-62 241.1 148 82.4
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 2.2e-60 235.7 148 81.8
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.2e-56 223.4 126 85.7
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.1e-54 216.9 149 76.5
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 2.5e-51 205.7 171 67.8
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 5.5e-51 204.5 149 71.1
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.1e-50 202.6 149 71.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 6.1e-50 201.1 149 71.8
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.0e-49 200.3 149 72.5
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.8e-47 191.4 149 67.8
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.6e-45 186.4 148 66.9
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.0e-45 186.0 144 70.1
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.0e-44 183.7 150 64.7
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.8e-44 181.8 149 65.1
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 3.8e-44 181.8 148 64.2
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 5.5e-43 177.9 152 66.4
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 7.2e-43 177.6 148 63.5
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 9.5e-43 177.2 148 66.9
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 9.5e-43 177.2 160 62.5
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.1e-42 176.0 149 63.8
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 3.6e-42 175.3 148 64.9
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 3.6e-42 175.3 148 64.2
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 4.7e-42 174.9 151 66.2
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 4.7e-42 174.9 148 62.2
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 4.7e-42 174.9 149 63.1
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 8.0e-42 174.1 149 63.1
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.0e-41 173.7 148 62.2
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 1.4e-41 173.3 151 63.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.8e-41 172.9 149 64.4
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 5.2e-41 171.4 148 62.2
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 6.8e-41 171.0 146 65.1
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 8.9e-41 170.6 151 64.2
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.0e-40 169.5 146 58.9
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.0e-40 169.5 156 59.6
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 3.4e-40 168.7 149 63.1
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 3.4e-40 168.7 149 63.1
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 4.4e-40 168.3 156 59.6
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 5.7e-40 167.9 145 62.8
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.3e-39 166.8 150 63.3
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.2e-39 166.0 151 57.6
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 2.8e-39 165.6 149 63.1
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 3.7e-39 165.2 149 61.1
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 3.7e-39 165.2 150 62.7
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 4.9e-39 164.9 150 62.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 4.9e-39 164.9 148 60.1
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 6.3e-39 164.5 156 58.3
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 8.3e-39 164.1 150 62.0
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 8.3e-39 164.1 150 62.7
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.1e-38 163.7 151 60.9
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.1e-38 163.7 148 60.8
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.1e-38 163.7 151 61.6
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.4e-38 162.5 150 61.3
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 7.0e-38 161.0 154 61.0
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 7.0e-38 161.0 146 60.3
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 7.8e-37 157.5 151 61.6
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 7.8e-37 157.5 153 61.4
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.3e-36 156.8 152 59.9
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 3.8e-36 155.2 154 57.1
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 6.6e-36 154.5 140 57.9
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 8.6e-36 154.1 152 59.2
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 8.6e-36 154.1 98 79.6
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 8.6e-36 154.1 152 59.9
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.3e-35 152.1 149 56.4
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 4.3e-35 151.8 150 54.0
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 7.3e-35 151.0 148 58.8
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.2e-34 150.2 153 55.6
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 2.1e-34 149.4 150 59.3
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.8e-34 149.1 150 58.7
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 3.6e-34 148.7 148 59.5
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 4.7e-34 148.3 161 55.9
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.7e-34 148.3 151 55.0
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 6.1e-34 147.9 148 56.8
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 8.0e-34 147.5 148 57.4
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 8.0e-34 147.5 148 58.8
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.0e-33 147.1 148 53.4
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.3e-33 146.0 148 57.4
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.3e-33 146.0 148 57.4
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 6.8e-33 144.4 159 54.7
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 8.9e-33 144.1 151 58.3
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 1.2e-32 143.7 163 55.8
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.2e-32 143.7 159 54.1
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 1.2e-32 143.7 144 59.7
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 1.5e-32 143.3 124 56.5
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.5e-32 143.3 173 52.6
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 7.5e-32 141.0 130 53.1
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 7.5e-32 141.0 170 50.6
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 9.8e-32 140.6 124 61.3
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 2.9e-31 139.0 143 56.6
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 3.7e-31 138.7 154 55.8
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 4.9e-31 138.3 142 56.3
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 2.4e-30 136.0 152 53.3
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 4.1e-30 135.2 97 72.2
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 3.9e-28 128.6 155 49.0
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 1.9e-27 126.3 148 54.7
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.2e-24 117.1 121 51.2
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.5e-24 116.7 130 53.1
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 4.4e-24 115.2 126 55.6
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.3e-23 113.6 92 63.0
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 6.4e-23 111.3 93 62.4
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 1.4e-22 110.2 147 42.9
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.2e-22 109.0 136 47.1
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.0e-20 102.4 174 43.7
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 5.1e-20 101.7 129 45.0
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.9e-19 99.8 148 42.6
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 1.1e-17 94.0 91 53.8
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 5.2e-17 91.7 148 46.6
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.2e-16 90.5 75 62.7
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 2.6e-16 89.4 61 77.0
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 3.7e-15 85.5 117 41.0
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 4.1e-14 82.0 91 48.4
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 5.4e-14 81.6 127 41.7
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 4.6e-13 78.6 93 46.2
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.9e-11 73.2 63 58.7
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 3.3e-11 72.4 60 61.7
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 9.5e-11 70.9 93 48.4
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.1e-09 67.4 55 61.8
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 2.4e-09 66.2 90 41.1
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 5.2e-09 65.1 76 47.4
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 6.8e-09 64.7 126 34.1
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 2.0e-08 63.2 102 39.2
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 7.6e-08 61.2 99 39.4
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.2e-07 59.7 42 69.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 2.2e-07 59.7 58 50.0
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 1.1e-06 57.4 72 43.1


User provided reference genes

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