Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 1.9e-226 788.9 399 100.0
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 2.2e-179 632.5 402 83.1
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.4e-178 629.8 417 79.4
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 1.0e-168 597.0 403 76.7
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 2.0e-148 529.6 399 72.7
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 2.0e-148 529.6 402 68.7
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 5.0e-139 498.4 393 70.2
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 8.0e-137 491.1 401 66.8
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 3.0e-136 489.2 402 63.4
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 7.5e-135 484.6 319 75.5
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 3.7e-134 482.3 394 66.0
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 4.8e-134 481.9 360 69.4
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 9.1e-133 477.6 399 63.7
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 2.9e-131 472.6 331 73.1
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 1.1e-130 470.7 378 66.1
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 7.2e-130 468.0 405 61.2
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 2.7e-129 466.1 434 60.1
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 2.7e-129 466.1 389 64.5
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 2.7e-129 466.1 395 63.3
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 2.7e-129 466.1 403 62.5
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 5.2e-128 461.8 319 72.1
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 1.2e-127 460.7 325 71.4
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 4.4e-127 458.8 310 73.2
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 7.5e-127 458.0 397 62.5
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 7.5e-127 458.0 333 70.6
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 7.5e-127 458.0 393 61.6
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 1.7e-126 456.8 403 60.3
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 1.7e-126 456.8 399 60.7
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 2.2e-126 456.4 400 60.0
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 6.3e-126 454.9 402 60.4
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 1.1e-125 454.1 374 63.9
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 1.4e-125 453.8 399 60.4
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 1.8e-125 453.4 390 62.1
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 1.8e-125 453.4 426 58.5
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 1.8e-125 453.4 309 73.8
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 4.1e-125 452.2 426 58.5
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 2.7e-124 449.5 386 61.9
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 5.9e-124 448.4 345 66.4
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 5.9e-124 448.4 319 72.1
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 5.9e-124 448.4 394 61.2
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 7.7e-124 448.0 319 71.2
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 7.7e-124 448.0 345 66.1
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 7.7e-124 448.0 355 67.0
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 1.3e-123 447.2 307 73.6
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 2.3e-123 446.4 344 68.6
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 2.3e-123 446.4 304 72.4
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 5.0e-123 445.3 378 64.8
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 1.9e-122 443.4 389 60.4
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 5.6e-122 441.8 308 72.1
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 7.2e-122 441.4 395 60.0
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 3.6e-121 439.1 313 70.6
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 3.6e-121 439.1 315 71.1
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 1.8e-120 436.8 319 70.2
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 4.0e-120 435.6 316 71.5
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 4.4e-119 432.2 313 69.3
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 5.7e-119 431.8 307 71.3
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 9.8e-119 431.0 334 66.8
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 2.2e-118 429.9 319 70.2
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 2.9e-118 429.5 321 68.2
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 4.9e-118 428.7 305 70.5
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 4.9e-118 428.7 403 59.8
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 6.4e-118 428.3 305 70.5
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 7.0e-117 424.9 305 69.8
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 1.6e-116 423.7 320 67.5
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 2.7e-116 422.9 306 70.6
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 4.6e-116 422.2 306 69.6
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 1.0e-115 421.0 306 69.9
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.3e-115 420.6 313 67.4
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 2.3e-115 419.9 308 68.2
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 2.9e-115 419.5 355 64.2
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 8.6e-115 417.9 305 69.2
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 1.5e-114 417.2 306 69.6
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 1.5e-114 417.2 306 69.6
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.9e-114 416.8 318 67.6
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 2.8e-113 412.9 304 70.1
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 3.1e-112 409.5 317 66.9
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 4.0e-112 409.1 303 70.0
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 6.8e-112 408.3 316 67.4
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 8.9e-112 407.9 279 74.6
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 1.5e-111 407.1 297 69.4
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 2.6e-111 406.4 317 66.9
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 6.4e-110 401.7 307 67.8
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 1.1e-109 401.0 298 68.1
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 2.3e-107 393.3 276 71.4
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 3.3e-106 389.4 311 64.6
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 5.6e-106 388.7 365 63.3
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 1.2e-105 387.5 307 65.5
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.4e-104 384.0 275 73.1
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.2e-103 380.9 329 58.7
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 1.1e-101 374.4 318 59.7
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 4.1e-101 372.5 460 50.4
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 8.6e-99 364.8 241 75.5
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 1.6e-97 360.5 309 59.2
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 4.7e-97 359.0 280 65.4
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 4.0e-96 355.9 310 58.4
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 3.4e-95 352.8 334 57.2
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 1.2e-92 344.4 301 61.1
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 7.8e-92 341.7 306 59.8
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 4.3e-90 335.9 312 58.3
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.2e-89 334.3 297 56.6
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 6.2e-89 332.0 285 60.7
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 4.2e-85 319.3 269 61.0
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 2.0e-79 300.4 229 70.3
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 7.6e-79 298.5 227 66.5
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 1.4e-77 294.3 194 74.7
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 4.0e-72 276.2 213 65.3
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 2.9e-70 270.0 334 48.2
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 8.4e-70 268.5 293 52.6
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 7.4e-66 255.4 307 47.6
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 2.0e-63 247.3 277 47.7
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 2.3e-59 233.8 174 64.4
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 2.5e-58 230.3 303 45.2
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 1.5e-50 204.5 346 41.3
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 4.1e-48 196.4 277 43.3
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 8.8e-43 178.7 130 65.4
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 1.9e-29 134.4 103 63.1
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 1.9e-29 134.4 103 63.1
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 5.2e-27 126.3 94 63.8
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 1.7e-25 121.3 107 58.9
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 2.7e-23 114.0 96 60.4
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 2.7e-23 114.0 96 60.4
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 2.2e-22 110.9 96 58.3
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 6.5e-22 109.4 90 60.0
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 5.4e-16 89.7 94 56.4
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 2.7e-12 77.4 55 65.5
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.8e-11 74.7 64 54.7
Eucgr.G00935 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.4e-08 65.1 111 38.7
Potri.001G311400 Populus trichocarpa HOM05D006342 ORTHO05D332779 2.9e-06 57.4 93 40.9


User provided reference genes

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