Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 2.0e-43 178.7 89 100.0
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 4.0e-28 127.9 85 74.1
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 3.1e-25 118.2 87 72.4
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.3e-23 112.8 88 68.2
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 1.5e-22 109.4 86 66.3
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.2e-22 108.2 86 65.1
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.6e-21 105.9 86 62.8
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 2.7e-21 105.1 74 68.9
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 8.0e-21 103.6 77 66.2
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 1.8e-20 102.4 80 65.0
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 3.0e-20 101.7 74 66.2
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 4.0e-20 101.3 79 67.1
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.2e-19 99.8 86 58.1
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.2e-19 99.8 74 64.9
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 1.2e-19 99.8 81 60.5
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 2.0e-19 99.0 87 59.8
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 2.0e-19 99.0 74 63.5
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 2.6e-19 98.6 83 55.4
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 3.4e-19 98.2 74 63.5
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 3.4e-19 98.2 82 61.0
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 3.4e-19 98.2 86 57.0
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.4e-19 97.8 80 60.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 5.7e-19 97.4 81 60.5
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 5.7e-19 97.4 86 58.1
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 7.5e-19 97.1 85 54.1
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 9.8e-19 96.7 87 58.6
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.3e-18 96.3 74 62.2
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.3e-18 96.3 79 60.8
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 1.3e-18 96.3 87 59.8
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.2e-18 95.5 74 63.5
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 2.8e-18 95.1 78 60.3
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 2.8e-18 95.1 86 55.8
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 3.7e-18 94.7 74 64.9
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.8e-18 94.4 86 54.7
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 6.3e-18 94.0 74 58.1
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 6.3e-18 94.0 84 56.0
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.3e-18 93.6 83 57.8
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.3e-18 93.6 83 57.8
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.3e-18 93.6 83 57.8
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.3e-18 93.6 83 57.8
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.3e-18 93.6 83 57.8
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.3e-18 93.6 83 57.8
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.1e-17 93.2 84 57.1
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-17 93.2 83 57.8
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.4e-17 92.8 76 60.5
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-17 92.8 81 56.8
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 1.4e-17 92.8 85 52.9
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.8e-17 92.4 86 57.0
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 1.8e-17 92.4 86 59.3
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-17 92.0 83 56.6
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 5.4e-17 90.9 83 54.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.4e-17 90.9 83 56.6
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 7.0e-17 90.5 85 60.0
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 7.0e-17 90.5 96 51.0
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.0e-17 90.5 83 56.6
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 2.0e-16 89.0 73 57.5
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 2.0e-16 89.0 80 51.2
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 2.7e-16 88.6 74 58.1
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 2.7e-16 88.6 94 51.1
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 3.5e-16 88.2 88 56.8
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.5e-16 88.2 56 82.1
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.5e-16 88.2 83 56.6
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.5e-16 88.2 86 57.0
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.5e-16 88.2 83 56.6
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 3.5e-16 88.2 86 51.2
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 4.5e-16 87.8 86 52.3
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 5.9e-16 87.4 81 60.5
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 5.9e-16 87.4 86 51.2
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 7.7e-16 87.0 81 53.1
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.0e-15 86.7 90 53.3
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.3e-15 86.3 60 66.7
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.3e-15 86.3 82 52.4
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.7e-15 85.9 56 80.4
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.7e-15 85.9 83 55.4
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.3e-15 85.5 68 58.8
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 2.3e-15 85.5 87 58.6
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 3.8e-15 84.7 69 62.3
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 6.6e-15 84.0 90 50.0
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 8.6e-15 83.6 100 47.0
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 8.6e-15 83.6 85 51.8
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 8.6e-15 83.6 79 54.4
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.1e-14 83.2 77 55.8
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 1.5e-14 82.8 60 65.0
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.5e-14 82.8 80 48.8
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 3.3e-14 81.6 72 55.6
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 3.3e-14 81.6 94 51.1
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 5.5e-14 80.9 84 52.4
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 7.2e-14 80.5 72 54.2
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 9.5e-14 80.1 59 62.7
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 9.5e-14 80.1 70 55.7
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.6e-13 79.3 78 46.2
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.6e-13 79.3 78 46.2
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 2.1e-13 79.0 70 54.3
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 2.8e-13 78.6 97 49.5
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 3.6e-13 78.2 60 60.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 4.7e-13 77.8 65 56.9
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 4.7e-13 77.8 85 47.1
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 6.1e-13 77.4 64 53.1
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 6.1e-13 77.4 60 60.0
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.0e-12 76.6 60 58.3
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.0e-12 76.6 70 51.4
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 1.4e-12 76.3 70 51.4
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.4e-12 76.3 78 47.4
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 2.3e-12 75.5 64 56.2
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.3e-12 75.5 60 56.7
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.3e-12 75.5 69 55.1
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 3.0e-12 75.1 72 50.0
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 4.0e-12 74.7 74 48.6
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 4.0e-12 74.7 74 48.6
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.0e-11 72.4 60 55.0
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 2.6e-11 72.0 60 55.0
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.8e-10 68.6 60 51.7
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 3.7e-10 68.2 85 43.5
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 4.9e-10 67.8 85 43.5
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.1e-09 66.6 73 50.7
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.8e-09 65.9 70 48.6
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.8e-09 65.9 72 47.2
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 3.1e-09 65.1 48 62.5
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.2e-08 63.2 56 66.1
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 2.7e-08 62.0 64 51.6
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 6.6e-07 57.4 47 55.3
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 6.6e-07 57.4 79 44.3
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 6.6e-07 57.4 67 38.8
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.9e-06 55.8 51 49.0
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 4.3e-06 54.7 65 43.1


User provided reference genes

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