Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 8.7e-67 257.3 179 100.0
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.6e-58 227.3 179 83.2
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.6e-58 227.3 179 76.0
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 4.8e-57 224.9 179 89.9
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.8e-57 224.9 179 89.4
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 7.9e-52 207.6 185 84.9
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.3e-49 198.0 179 85.5
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 7.2e-45 184.5 179 78.2
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 9.4e-45 184.1 190 71.6
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.6e-44 183.3 175 80.0
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.3e-43 179.5 160 88.8
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.0e-42 176.4 194 71.6
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 9.7e-42 174.1 169 78.7
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.2e-41 172.9 169 78.1
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 4.8e-41 171.8 175 73.7
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 8.2e-41 171.0 169 78.1
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 5.3e-40 168.3 172 74.4
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 6.9e-40 167.9 205 62.4
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 5.9e-39 164.9 172 75.6
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.7e-38 163.3 192 67.2
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 2.2e-38 162.9 188 71.3
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 3.8e-38 162.2 197 69.5
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 5.0e-38 161.8 167 68.3
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 4.2e-37 158.7 99 80.8
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 7.2e-37 157.9 172 71.5
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.6e-36 155.6 192 67.2
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 7.9e-36 154.5 163 60.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.4e-35 153.7 188 66.0
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.3e-35 152.9 165 64.2
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 3.9e-35 152.1 97 78.4
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.1e-34 150.6 163 74.8
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 1.1e-34 150.6 181 58.6
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.1e-34 150.6 185 65.9
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 2.0e-34 149.8 198 62.6
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 2.6e-34 149.4 99 76.8
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.3e-34 149.1 177 55.4
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 4.4e-34 148.7 99 76.8
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.3e-33 147.1 99 75.8
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.3e-33 147.1 99 75.8
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.7e-33 146.7 177 68.9
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.7e-33 145.6 188 62.8
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 3.7e-33 145.6 99 73.7
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 3.7e-33 145.6 194 59.8
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 4.8e-33 145.2 193 59.6
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 6.3e-33 144.8 196 63.8
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 8.2e-33 144.4 99 74.7
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-32 143.3 99 73.7
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.8e-32 143.3 99 73.7
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.4e-32 142.9 99 71.7
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 2.4e-32 142.9 163 66.9
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 3.1e-32 142.5 99 70.7
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.1e-32 142.5 99 71.7
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 5.3e-32 141.7 99 72.7
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 9.1e-32 141.0 97 74.2
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.2e-31 140.6 96 75.0
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 1.0e-30 137.5 98 73.5
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.3e-30 137.1 99 69.7
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 1.3e-30 137.1 96 72.9
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.7e-30 136.7 79 86.1
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.7e-30 136.7 145 70.3
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 2.9e-30 136.0 98 72.4
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 2.9e-30 136.0 96 71.9
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 3.8e-30 135.6 97 69.1
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 5.0e-30 135.2 93 73.1
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 6.5e-30 134.8 96 70.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.1e-29 134.0 98 71.4
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-29 134.0 145 60.7
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.9e-29 133.3 93 72.0
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 2.5e-29 132.9 98 70.4
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 7.2e-29 131.3 175 48.0
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 9.4e-29 131.0 94 70.2
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 6.1e-28 128.3 86 75.6
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.4e-27 127.1 87 75.9
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.3e-27 126.3 96 60.4
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 6.7e-27 124.8 97 63.9
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.1e-26 124.0 95 64.2
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.3e-26 122.5 87 73.6
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 5.7e-26 121.7 99 69.7
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 9.7e-26 120.9 86 69.8
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 1.7e-25 120.2 90 66.7
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.8e-25 119.4 126 53.2
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 6.3e-25 118.2 83 73.5
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 6.3e-25 118.2 83 73.5
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 8.2e-25 117.9 95 63.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.4e-24 117.1 97 69.1
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 4.1e-24 115.5 91 58.2
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 7.0e-24 114.8 215 53.5
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.2e-23 114.0 96 62.5
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 1.6e-23 113.6 86 66.3
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.5e-23 112.1 88 63.6
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 5.0e-22 108.6 96 56.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 5.0e-22 108.6 96 56.2
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 5.0e-22 108.6 96 56.2
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 5.0e-22 108.6 99 59.6
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 6.5e-22 108.2 132 57.6
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 4.2e-21 105.5 81 71.6
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.2e-20 104.0 77 67.5
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 2.1e-20 103.2 92 54.3
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 2.1e-20 103.2 92 54.3
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 2.7e-20 102.8 79 70.9
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 2.7e-20 102.8 80 72.5
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 6.8e-19 98.2 80 71.2
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 8.8e-19 97.8 153 61.4
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 3.4e-18 95.9 88 63.6
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 3.4e-18 95.9 88 63.6
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 8.3e-17 91.3 187 56.7
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 9.1e-16 87.8 89 53.9
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.0e-15 86.7 80 57.5
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 2.0e-15 86.7 95 49.5
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.7e-14 83.6 100 48.0
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 8.5e-14 81.3 97 46.4
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 3.2e-13 79.3 48 79.2
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 8.0e-12 74.7 88 46.6
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.0e-11 74.3 73 58.9
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.0e-11 74.3 50 70.0
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 2.8e-09 66.2 85 47.1
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 2.8e-09 66.2 88 47.7
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 9.1e-08 61.2 45 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 1.6e-07 60.5 60 45.0
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.6e-07 60.5 99 42.4
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.6e-07 60.5 121 63.6
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 8.6e-06 54.7 59 44.1


User provided reference genes

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