Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 2.1e-264 915.2 489 100.0
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 5.6e-201 704.5 487 73.3
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.5e-150 535.8 469 61.0
RcHm_v2.0_Chr6g0260911 Rosa chinensis HOM05D012440 ORTHO05D009452 1.5e-148 530.4 361 72.9
RcHm_v2.0_Chr2g0127541 Rosa chinensis HOM05D008315 ORTHO05D009452 8.5e-141 504.6 275 99.6
FAN04G2114 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.2e-128 463.4 468 56.4
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 3.1e-66 256.9 358 41.3
FAN23G0323 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.7e-59 233.4 251 53.4
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 1.5e-52 211.5 365 35.9
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.4e-52 209.9 358 35.5
FAN06G4265 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.3e-51 208.4 172 65.1
FAN21G3607 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.7e-51 206.8 214 56.1
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.8e-51 206.5 358 35.8
FAN19G2826 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.8e-51 206.5 174 64.4
FAN27G1488 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.8e-51 206.5 154 69.5
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.5e-49 199.9 357 34.7
FAN03G0559 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.9e-48 197.2 161 66.5
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.1e-46 191.0 374 33.2
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.7e-46 189.9 370 32.4
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 2.3e-45 187.6 359 32.6
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 8.8e-45 185.7 322 32.9
FAN13G1770 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.8e-43 179.9 189 51.3
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 1.6e-41 174.9 294 34.7
FAN03G0562 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.6e-41 174.1 357 31.7
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 5.9e-41 172.9 349 31.8
FAN22G0307 Fragaria x ananassa HOM05D012440 ORTHO05D009452 5.0e-40 169.9 125 69.6
RcHm_v2.0_Chr7g0201721 Rosa chinensis HOM05D008315 ORTHO05D009452 3.2e-39 167.2 192 43.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 7.2e-39 166.0 266 32.0
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.7e-38 163.3 374 30.2
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 8.0e-38 162.5 333 32.1
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 5.2e-37 159.8 376 29.5
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.5e-36 158.3 374 29.9
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 8.2e-35 152.5 336 31.2
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 2.4e-34 151.0 246 34.6
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 2.7e-33 147.5 308 32.5
RcHm_v2.0_Chr6g0254441 Rosa chinensis HOM05D008315 ORTHO05D009452 5.9e-33 146.4 230 35.7
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 7.7e-33 146.0 394 29.4
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.0e-32 145.6 289 31.5
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.2e-32 144.4 322 30.1
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.2e-32 144.4 373 29.8
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.9e-31 141.4 326 29.4
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.6e-30 137.1 333 30.3
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 6.1e-30 136.3 376 26.1
RcHm_v2.0_Chr2g0151391 Rosa chinensis HOM05D008315 ORTHO05D009452 5.2e-29 133.3 187 32.6
Hma1.2p1_0154F.1_g068115 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 1.4e-26 125.2 304 29.3
Hma1.2p1_0160F.1_g070785 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 1.4e-26 125.2 304 29.3
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.6e-25 121.7 343 28.9
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.7e-25 120.9 252 31.7
FAN05G2961 Fragaria x ananassa HOM05D012440 ORTHO05D009452 8.5e-24 115.9 101 62.4
RcHm_v2.0_Chr3g0481961 Rosa chinensis HOM05D008315 ORTHO05D009452 1.5e-23 115.2 152 36.2
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.2e-23 112.8 333 27.3
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.2e-23 112.8 333 27.3
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 6.1e-22 109.8 333 27.0
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 8.0e-22 109.4 330 29.7
RcHm_v2.0_Chr5g0039211 Rosa chinensis HOM05D008315 ORTHO05D009452 1.0e-21 109.0 120 44.2
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.0e-21 109.0 332 27.1
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-20 105.5 280 26.4
RcHm_v2.0_Chr7g0201731 Rosa chinensis HOM05D008315 ORTHO05D009452 4.4e-20 103.6 160 41.9
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 7.5e-20 102.8 307 25.7
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.3e-19 102.1 279 28.3
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.5e-17 93.6 281 25.6
FAN09G2320 Fragaria x ananassa HOM05D000769 ORTHO05D003127 7.8e-17 92.8 53 79.2
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.0e-16 92.4 286 25.5
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.0e-16 92.4 271 27.3
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.3e-16 91.3 295 24.7
CANSAT11G0213 Cannabis sativa HOM05D001309 ORTHO05D000385 2.9e-16 90.9 256 29.3
Atru.chr1.767 Acer truncatum HOM05D001309 ORTHO05D000385 3.8e-16 90.5 340 25.3
FAN08G0992 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.8e-16 90.5 213 30.0
MD03G1101500 Malus domestica HOM05D008315 ORTHO05D009452 1.1e-15 89.0 107 44.9
RcHm_v2.0_Chr5g0015951 Rosa chinensis HOM05D008315 ORTHO05D009452 4.3e-15 87.0 168 30.4
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 9.5e-15 85.9 260 26.9
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 3.6e-14 84.0 288 26.7
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 3.6e-14 84.0 256 27.3
TAR628G0437 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.6e-14 84.0 270 27.0
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.0e-13 82.4 354 24.9
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.0e-13 82.4 354 24.6
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.3e-13 81.3 333 25.5
PSO541G0763 Papaver somniferum HOM05D001309 ORTHO05D000385 3.0e-13 80.9 239 25.9
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.2e-13 80.1 269 25.3
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 6.8e-13 79.7 277 24.5
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 8.9e-13 79.3 250 26.8
FAN20G0161 Fragaria x ananassa HOM05D008315 ORTHO05D009452 8.9e-13 79.3 270 27.0
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 8.9e-13 79.3 292 25.0
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.2e-12 79.0 181 30.4
CANSAT35G0020 Cannabis sativa HOM05D001309 ORTHO05D000385 5.7e-12 76.6 285 25.6
ECA240G1654 Erigeron canadensis HOM05D005763 ORTHO05D005970 5.7e-12 76.6 213 27.2
MBI14_g03116_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.7e-12 76.6 277 24.2
MD15G1288300 Malus domestica HOM05D027729 ORTHO05D009452 5.7e-12 76.6 273 26.0
TAR376G0246 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.7e-12 76.6 375 25.6
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.5e-12 76.3 344 25.9
TAR633G1156 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.8e-12 75.9 399 23.6
EL10As3g23351 Beta vulgaris HOM05D008455 ORTHO05D009597 1.7e-11 75.1 245 22.4
Manes.06G115750 Manihot esculenta HOM05D009290 ORTHO05D009597 2.2e-11 74.7 268 25.7
Nn4g24072 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.2e-11 74.7 197 27.4
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 2.2e-11 74.7 157 31.2
Rhsim11G0067500 Rhododendron simsii HOM05D010774 ORTHO05D013539 2.9e-11 74.3 232 27.6
TAR625G0459 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.9e-11 74.3 253 27.3
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 3.7e-11 73.9 235 27.2
HanXRQChr09g0254541 Helianthus annuus HOM05D008488 ORTHO05D000385 4.9e-11 73.6 202 26.7
TAR633G1500 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.9e-11 73.6 252 27.4
Atru.chr6.1726 Acer truncatum HOM05D001309 ORTHO05D000385 8.3e-11 72.8 245 26.1
Nn7g37626 Nelumbo nucifera HOM05D001309 ORTHO05D000385 8.3e-11 72.8 192 28.6
FvH4_4g17840 Fragaria vesca HOM05D008315 ORTHO05D009452 1.1e-10 72.4 94 38.3
RcHm_v2.0_Chr4g0397391 Rosa chinensis HOM05D008315 ORTHO05D009452 1.1e-10 72.4 194 28.4
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.4e-10 72.0 158 25.3
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.4e-10 71.2 157 25.5
Atru.chr6.1842 Acer truncatum HOM05D005012 ORTHO05D005886 3.2e-10 70.9 171 28.7
Atru.chr3.1415 Acer truncatum HOM05D005012 ORTHO05D005886 4.1e-10 70.5 266 23.7
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 4.1e-10 70.5 280 26.1
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 4.1e-10 70.5 213 24.9
Hund04850 Selenicereus undatus HOM05D006468 ORTHO05D006908 7.0e-10 69.7 273 25.6
TAR375G0312 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.0e-10 69.7 178 28.1
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 9.2e-10 69.3 343 23.9
MBI09_g15192_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 9.2e-10 69.3 305 23.0
Hund24050 Selenicereus undatus HOM05D006468 ORTHO05D006908 1.2e-09 68.9 273 25.6
ECA096G0001 Erigeron canadensis HOM05D008488 ORTHO05D000385 2.0e-09 68.2 334 24.0
Ah.05g177810 Amaranthus hybridus HOM05D001385 ORTHO05D002073 2.7e-09 67.8 271 25.8
MD15G1435100 Malus domestica HOM05D008595 ORTHO05D000669 2.7e-09 67.8 254 26.8
FAN21G3482 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.5e-09 67.4 178 29.2
TAR624G1439 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.5e-09 67.4 164 29.3
PSO339G3546 Papaver somniferum HOM05D009891 ORTHO05D009626 4.6e-09 67.0 187 26.2
Hund10707 Selenicereus undatus HOM05D006468 ORTHO05D006908 4.6e-09 67.0 273 25.3
TWI31G0781 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.6e-09 67.0 388 25.0
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 5.9e-09 66.6 296 22.0
TAR633G2694 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.9e-09 66.6 364 23.9
FAN20G0527 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.8e-09 66.2 178 29.2
Hund10415 Selenicereus undatus HOM05D006468 ORTHO05D006908 7.8e-09 66.2 273 25.6
Zm00001eb267220 Zea mays HOM05D008576 ORTHO05D000385 7.8e-09 66.2 304 24.0
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.3e-08 65.5 183 25.1
EL10Ac1g02060 Beta vulgaris HOM05D001385 ORTHO05D008760 1.7e-08 65.1 267 22.8
Hund06374 Selenicereus undatus HOM05D001385 ORTHO05D004434 2.3e-08 64.7 289 26.3
ECA164G0002 Erigeron canadensis HOM05D008488 ORTHO05D000385 3.9e-08 63.9 288 24.7
Nitab4.5_0010535g0040 Nicotiana tabacum HOM05D009290 ORTHO05D009597 3.9e-08 63.9 187 27.3
ECA232G4413 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.0e-08 63.5 347 22.8
TAR369G0592 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.0e-08 63.5 225 28.9
Zm00001eb380870 Zea mays HOM05D008576 ORTHO05D000385 5.0e-08 63.5 363 23.1
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 6.6e-08 63.2 179 26.3
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 6.6e-08 63.2 154 29.9
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 8.6e-08 62.8 280 24.3
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.1e-07 62.4 165 26.1
FAN15G1960 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.5e-07 62.0 178 26.4
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 1.5e-07 62.0 294 24.1
FAN17G0399 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.9e-07 61.6 173 27.7
Nitab4.5_0001261g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.9e-07 61.6 135 25.9
PGR083G0420 Punica granatum HOM05D001309 ORTHO05D000385 1.9e-07 61.6 246 23.6
Rhsim01G0158900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-07 61.6 283 24.0
COL.COLO4_29078 Corchorus olitorius HOM05D001309 ORTHO05D000385 2.5e-07 61.2 349 23.2
TAR365G0205 Trochodendron aralioides HOM05D000141 ORTHO05D000385 2.5e-07 61.2 335 24.2
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 3.3e-07 60.8 339 22.7
TAR636G2298 Trochodendron aralioides HOM05D009698 ORTHO05D000385 3.3e-07 60.8 157 29.3
Ca_12697_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 4.3e-07 60.5 306 23.9
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 4.3e-07 60.5 202 26.7
Nitab4.5_0022706g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 4.3e-07 60.5 257 23.7
FAN22G1440 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.6e-07 60.1 139 29.5
SGA_v2.0_scaffold279G46788 Striga asiatica HOM05D004615 ORTHO05D000385 5.6e-07 60.1 208 25.0
TAR629G2892 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.6e-07 60.1 205 25.4
TAR472G0003 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.5e-07 59.3 301 22.9
FAN09G2984 Fragaria x ananassa HOM05D018384 ORTHO05D009452 1.2e-06 58.9 70 40.0
MBI17_g16204_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-06 58.9 130 24.6
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 1.2e-06 58.9 264 24.2
AUR62014955 Chenopodium quinoa HOM05D008127 ORTHO05D000385 1.6e-06 58.5 192 25.0
TAR374G1143 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.6e-06 58.5 269 25.3
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 2.1e-06 58.2 195 26.2
Dinv19999 Davidia involucrata HOM05D010146 ORTHO05D000385 2.1e-06 58.2 112 29.5
HanXRQChr03g0084621 Helianthus annuus HOM05D008488 ORTHO05D000385 2.1e-06 58.2 187 27.3
Nn7g37991 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.1e-06 58.2 176 27.3
PSO384G4636 Papaver somniferum HOM05D009891 ORTHO05D000385 2.1e-06 58.2 188 27.1
FAN05G1126 Fragaria x ananassa HOM05D009706 ORTHO05D009452 3.6e-06 57.4 81 39.5
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 4.7e-06 57.0 109 29.4
AUR62033141 Chenopodium quinoa HOM05D004615 ORTHO05D000385 6.2e-06 56.6 294 21.4
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.0e-06 56.2 252 26.2
PSO339G1145 Papaver somniferum HOM05D009891 ORTHO05D009626 8.0e-06 56.2 263 22.8
PSO384G0352 Papaver somniferum HOM05D020530 ORTHO05D023060 8.0e-06 56.2 332 23.8
Hund23750 Selenicereus undatus HOM05D006468 ORTHO05D006908 8.0e-06 56.2 272 22.8


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