Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 0.0e+00 1305.4 660 100.0
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 0.0e+00 1221.8 661 93.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 0.0e+00 1216.8 661 93.2
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 0.0e+00 1216.1 661 92.9
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 0.0e+00 1107.4 650 85.8
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 0.0e+00 1103.6 651 85.7
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 0.0e+00 1100.1 661 84.3
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.0e-306 1054.7 659 78.8
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.2e-301 1038.5 647 78.7
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 1.9e-300 1035.4 649 78.9
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 1.6e-299 1032.3 649 78.4
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 5.7e-297 1023.8 646 77.7
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 9.7e-289 996.5 661 74.6
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 2.8e-288 995.0 645 76.4
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 4.5e-286 987.6 645 74.7
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.9e-285 984.9 661 75.0
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 8.5e-285 983.4 644 74.4
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.5e-284 981.9 661 74.6
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 4.2e-284 981.1 654 75.8
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 9.4e-284 979.9 661 73.4
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 4.6e-283 977.6 661 73.4
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 6.1e-283 977.2 660 75.3
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 7.9e-283 976.9 663 74.5
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 1.5e-281 972.6 645 75.2
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.2e-280 968.8 658 73.9
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 2.2e-280 968.8 637 76.1
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 2.8e-280 968.4 655 74.0
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 1.8e-279 965.7 642 74.6
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 2.4e-279 965.3 637 76.0
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 5.3e-279 964.1 653 72.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 5.9e-278 960.7 659 72.1
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 7.7e-278 960.3 643 73.7
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 7.7e-278 960.3 669 72.9
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 2.2e-277 958.7 662 72.4
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 2.9e-277 958.4 661 73.4
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.1e-275 952.2 647 73.0
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.5e-273 946.0 658 71.9
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 3.3e-273 944.9 614 76.1
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 4.4e-273 944.5 647 73.3
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 4.1e-271 937.9 646 72.8
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 2.6e-270 935.3 647 72.8
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 4.5e-270 934.5 652 71.0
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 7.2e-268 927.2 648 71.3
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.8e-266 922.5 661 69.1
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 8.8e-266 920.2 662 69.8
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.2e-265 919.8 648 71.0
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 1.7e-264 916.0 651 70.2
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.0e-262 909.1 663 71.2
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 4.5e-262 907.9 659 69.2
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 6.5e-261 904.0 664 68.8
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 6.5e-261 904.0 667 68.4
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.5e-260 902.1 589 75.0
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 4.0e-258 894.8 658 68.2
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 6.8e-258 894.0 648 70.1
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.5e-257 892.9 610 72.1
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.0e-257 892.5 668 67.5
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.0e-257 892.5 649 68.6
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.4e-255 886.3 648 69.8
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 1.0e-253 880.2 642 67.3
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 1.3e-253 879.8 655 66.3
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 1.3e-253 879.8 655 66.3
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 4.2e-252 874.8 654 66.5
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 4.7e-251 871.3 653 66.2
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 6.1e-251 870.9 654 66.7
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 4.0e-250 868.2 660 66.4
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.2e-250 867.8 660 66.4
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 5.2e-250 867.8 651 67.6
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 6.8e-250 867.5 663 66.1
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 8.8e-250 867.1 660 67.9
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 2.0e-249 865.9 654 66.5
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 3.4e-249 865.1 655 65.5
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 5.7e-249 864.4 651 68.4
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 9.8e-249 863.6 654 65.1
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 1.7e-248 862.8 642 66.2
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 3.7e-248 861.7 655 64.9
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 1.8e-247 859.4 653 68.0
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 2.7e-246 855.5 657 65.8
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 2.9e-240 835.5 648 65.3
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 3.2e-239 832.0 654 64.2
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 1.3e-237 826.6 644 64.6
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 1.7e-237 826.2 647 64.9
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 3.9e-237 825.1 654 63.9
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 5.2e-234 814.7 655 65.6
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 8.9e-234 813.9 654 63.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.1e-231 807.0 674 63.5
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 3.2e-231 805.4 656 63.0
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 8.1e-227 790.8 525 73.9
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 1.2e-225 786.9 555 69.5
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.9e-223 779.6 645 64.5
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 5.1e-213 745.0 648 61.4
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 5.6e-204 714.9 649 59.9
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.2e-200 703.0 617 61.4
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 8.4e-200 701.0 553 64.6
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.9e-199 699.9 651 60.1
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 5.1e-197 691.8 673 57.2
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 4.0e-194 682.2 631 58.2
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 2.1e-174 616.7 582 57.9
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 1.6e-171 607.1 442 69.2
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.3e-168 597.4 497 61.0
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 4.6e-166 589.0 645 51.9
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.0e-165 587.8 635 50.2
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 1.4e-162 577.4 657 47.9
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 3.2e-159 566.2 651 46.9
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 4.5e-153 545.8 646 45.0
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 2.4e-122 443.7 636 38.8
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.6e-116 423.7 226 91.6
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 8.1e-94 349.0 339 56.9
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 1.0e-67 262.3 146 87.7
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 3.2e-50 204.1 280 45.4
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 2.1e-49 201.4 290 41.7
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 3.3e-47 194.1 156 64.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 8.2e-46 189.5 138 68.1
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.7e-43 181.8 107 76.6
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 2.9e-43 181.0 160 58.8
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.4e-42 178.7 107 75.7
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.5e-42 177.9 198 52.0
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 8.8e-40 169.5 155 60.0
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 3.7e-38 164.1 110 76.4
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 4.1e-37 160.6 166 54.8
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.3e-37 160.2 155 54.8
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 2.1e-33 148.3 94 77.7
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 1.4e-32 145.6 355 29.0
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 5.7e-31 140.2 85 72.9
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 2.4e-29 134.8 83 78.3
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.0e-27 129.4 101 63.4
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 6.5e-27 126.7 80 75.0
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 8.8e-24 116.3 101 60.4
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.2e-23 115.9 92 64.1
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 5.5e-18 97.1 88 62.5
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 2.8e-17 94.7 56 73.2
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 5.2e-16 90.5 101 46.5
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 1.2e-15 89.4 573 21.6
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 3.4e-15 87.8 54 74.1
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 3.4e-15 87.8 205 30.7
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.8e-14 84.7 48 79.2
SMO117G0241 Selaginella moellendorffii HOM05D067901 ORTHO05D006758 4.9e-06 57.4 178 28.7


User provided reference genes

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