Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-84 313.9 151 100.0
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-84 313.9 151 100.0
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-84 313.9 151 100.0
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 4.3e-83 311.2 151 98.7
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 3.4e-80 301.6 152 96.7
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 8.1e-74 280.4 149 87.9
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.1e-74 280.4 149 87.9
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.1e-74 280.4 149 87.9
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.0e-61 237.7 218 58.7
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-60 236.9 149 77.9
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 3.6e-58 228.4 150 68.0
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 4.8e-58 228.0 133 78.9
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 4.8e-58 228.0 148 71.6
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 6.2e-58 227.6 134 78.4
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.2e-58 227.6 134 78.4
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 8.1e-58 227.3 134 76.9
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-57 225.7 143 73.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 4.0e-57 224.9 133 79.7
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 9.0e-57 223.8 134 75.4
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.2e-56 223.4 134 76.9
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-56 223.0 147 74.1
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.5e-56 221.5 137 74.5
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 7.6e-56 220.7 137 74.5
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 2.2e-55 219.2 134 73.1
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 8.4e-55 217.2 145 66.9
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-54 216.9 142 69.0
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-54 216.9 151 71.5
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-54 216.9 142 69.0
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-54 216.9 135 77.8
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-54 216.5 137 73.7
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-54 216.1 151 71.5
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.4e-54 215.7 151 71.5
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-54 215.7 142 68.3
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 9.3e-54 213.8 144 69.4
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 9.3e-54 213.8 149 72.5
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.2e-53 213.4 136 71.3
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.6e-53 213.0 135 71.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.7e-53 212.2 135 70.4
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 2.7e-53 212.2 136 73.5
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.7e-53 212.2 134 70.1
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.0e-52 210.3 136 68.4
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.8e-52 209.5 142 66.9
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.9e-52 208.4 136 69.1
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.9e-52 208.4 136 69.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 3.9e-52 208.4 134 72.4
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 5.1e-52 208.0 152 69.1
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 8.7e-52 207.2 144 67.4
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 8.7e-52 207.2 134 70.9
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.1e-51 206.8 148 65.5
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.5e-51 206.5 134 70.9
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 3.3e-51 205.3 130 70.0
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.3e-51 205.3 139 66.2
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 3.3e-51 205.3 145 67.6
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 4.3e-51 204.9 140 66.4
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 7.4e-51 204.1 135 68.1
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.1e-50 202.6 133 66.9
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.7e-50 201.8 141 64.5
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 4.8e-50 201.4 133 67.7
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.8e-50 201.4 147 65.3
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.8e-50 201.4 151 63.6
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.2e-50 201.1 140 65.0
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 8.1e-50 200.7 141 64.5
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 8.1e-50 200.7 141 64.5
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.1e-49 200.3 136 66.2
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.4e-49 199.1 142 66.2
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.1e-49 198.7 134 67.2
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.0e-49 198.4 135 68.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-49 198.4 134 67.2
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 4.0e-49 198.4 135 67.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 6.9e-49 197.6 133 66.2
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 9.0e-49 197.2 138 65.2
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 9.0e-49 197.2 138 65.2
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.2e-48 196.8 134 66.4
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.2e-48 196.8 146 63.0
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.5e-48 196.4 133 65.4
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.0e-48 196.1 135 68.1
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.6e-48 195.7 139 64.0
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-48 195.7 151 66.2
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.4e-48 195.3 134 66.4
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 3.4e-48 195.3 135 70.4
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 5.8e-48 194.5 128 70.3
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.0e-47 193.7 142 65.5
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.3e-47 193.4 134 65.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.7e-47 193.0 134 64.9
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.7e-47 193.0 137 65.0
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-47 193.0 151 65.6
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.9e-47 192.2 135 64.4
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.8e-47 191.8 181 54.7
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.9e-47 191.4 136 65.4
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.5e-47 191.0 135 65.9
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 6.5e-47 191.0 137 66.4
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.4e-47 190.7 130 65.4
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.4e-46 189.9 136 66.9
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.9e-46 189.5 127 70.1
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 2.5e-46 189.1 134 66.4
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 2.5e-46 189.1 133 64.7
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.2e-46 188.7 133 62.4
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.2e-46 188.7 135 65.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 7.1e-46 187.6 133 66.2
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 7.1e-46 187.6 133 66.2
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 2.1e-45 186.0 136 64.7
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.7e-45 185.7 136 64.0
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 3.5e-45 185.3 136 65.4
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 4.6e-45 184.9 154 59.7
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.0e-44 183.7 133 60.9
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.0e-44 183.7 136 60.3
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.0e-44 183.7 135 61.5
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-44 183.0 133 60.9
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-44 183.0 134 62.7
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.3e-44 182.6 133 63.2
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.3e-44 182.6 132 62.9
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.1e-44 181.4 135 63.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.1e-43 180.3 130 63.8
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.5e-43 179.9 133 63.2
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.9e-43 179.5 137 59.1
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.3e-43 178.7 137 59.9
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.3e-43 178.7 137 59.9
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 7.4e-43 177.6 136 62.5
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 7.4e-43 177.6 135 63.0
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 4.8e-42 174.9 138 60.1
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.4e-41 173.3 133 60.2
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.1e-41 172.2 138 57.2
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.5e-40 169.9 97 76.3
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.0e-40 169.5 133 60.2
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 3.4e-40 168.7 133 58.6
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 5.9e-40 167.9 131 59.5
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 7.6e-40 167.5 145 51.7
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 7.6e-40 167.5 145 51.7
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.0e-39 167.2 145 55.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-39 166.8 136 55.9
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 3.8e-39 165.2 135 60.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.0e-39 164.9 136 55.9
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 6.5e-39 164.5 148 54.7
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 4.2e-38 161.8 96 74.0
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-37 160.2 145 59.3
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.2e-37 160.2 138 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.1e-37 159.5 148 48.0
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 2.7e-37 159.1 150 52.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 4.6e-37 158.3 136 55.1
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 6.1e-37 157.9 136 58.1
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 7.9e-37 157.5 133 51.9
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-36 156.8 145 58.6
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-36 156.8 133 56.4
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 8.7e-36 154.1 135 58.5
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.5e-35 152.5 135 57.0
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 4.3e-35 151.8 111 69.4
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 7.4e-35 151.0 138 52.9
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 3.7e-34 148.7 78 98.7
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 4.5e-32 141.7 134 47.0
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 9.4e-30 134.0 111 58.6
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.7e-29 132.5 142 46.5
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.4e-28 130.2 132 50.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 6.7e-28 127.9 53 100.0
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.8e-26 121.7 133 45.1
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-24 117.1 124 51.6
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.2e-20 101.7 101 54.5
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.1e-19 100.5 85 61.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.6e-19 99.4 72 54.2
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.6e-19 99.4 115 46.1
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-18 97.1 105 53.3
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.2e-18 94.4 74 68.9
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.4e-17 92.8 112 43.8
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 4.5e-16 88.6 67 64.2
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.7e-15 86.7 52 80.8
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 5.0e-15 85.1 131 35.9
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 5.0e-15 85.1 50 66.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 9.7e-11 70.9 63 57.1
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 6.3e-10 68.2 47 74.5
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 6.3e-10 68.2 40 62.5
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 1.7e-07 60.1 72 47.2


User provided reference genes

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