Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0141501 Rosa chinensis HOM05D008722 ORTHO05D000009 4.3e-95 351.3 175 100.0
RcHm_v2.0_Chr5g0016281 Rosa chinensis HOM05D000030 ORTHO05D000009 3.6e-49 198.7 150 66.7
RcHm_v2.0_Chr7g0242101 Rosa chinensis HOM05D000030 ORTHO05D000031 6.1e-49 198.0 150 67.3
RcHm_v2.0_Chr4g0423601 Rosa chinensis HOM05D000030 ORTHO05D000031 2.6e-39 166.0 120 70.8
RcHm_v2.0_Chr4g0396361 Rosa chinensis HOM05D008722 ORTHO05D000031 8.3e-38 161.0 120 68.3
RcHm_v2.0_Chr2g0170381 Rosa chinensis HOM05D000030 ORTHO05D000009 1.0e-27 127.5 153 49.7
RcHm_v2.0_Chr3g0467291 Rosa chinensis HOM05D000030 ORTHO05D000009 3.0e-27 125.9 153 45.1
FvH4_4g08801 Fragaria vesca HOM05D000030 ORTHO05D000031 8.1e-25 117.9 151 42.4
FvH4_1g22411 Fragaria vesca HOM05D008722 ORTHO05D012680 6.8e-24 114.8 94 56.4
FvH4_6g40821 Fragaria vesca HOM05D008722 ORTHO05D012680 1.5e-23 113.6 94 56.4
FvH4_6g16042 Fragaria vesca HOM05D008722 ORTHO05D012680 2.0e-23 113.2 94 56.4
RcHm_v2.0_Chr7g0202411 Rosa chinensis HOM05D000030 ORTHO05D000031 4.4e-23 112.1 140 44.3
FvH4_3g15421 Fragaria vesca HOM05D008722 ORTHO05D012680 2.1e-20 103.2 94 52.1
FvH4_6g52721 Fragaria vesca HOM05D008722 ORTHO05D000031 5.1e-19 98.6 131 37.4
RcHm_v2.0_Chr6g0251881 Rosa chinensis HOM05D000030 ORTHO05D000009 8.1e-17 91.3 162 34.6
RcHm_v2.0_Chr5g0007101 Rosa chinensis HOM05D000030 ORTHO05D000031 8.9e-16 87.8 157 36.3
FvH4_4g09691 Fragaria vesca HOM05D008722 ORTHO05D000031 1.5e-15 87.0 121 40.5
RcHm_v2.0_Chr5g0038441 Rosa chinensis HOM05D000030 ORTHO05D000009 2.2e-14 83.2 157 35.0
FvH4_c5g00011 Fragaria vesca HOM05D000030 ORTHO05D013601 8.4e-14 81.3 165 32.7
MD05G1210500 Malus domestica HOM05D000030 ORTHO05D000031 3.2e-13 79.3 147 35.4
RcHm_v2.0_Chr2g0142391 Rosa chinensis HOM05D000030 ORTHO05D000031 4.1e-13 79.0 142 35.9
FvH4_4g06882 Fragaria vesca HOM05D000030 ORTHO05D000031 9.2e-13 77.8 149 33.6
RcHm_v2.0_Chr6g0289081 Rosa chinensis HOM05D000030 ORTHO05D000031 2.7e-12 76.3 61 59.0
FvH4_4g08852 Fragaria vesca HOM05D008722 ORTHO05D000031 1.0e-11 74.3 70 45.7
FvH4_2g05022 Fragaria vesca HOM05D000030 ORTHO05D000009 2.3e-11 73.2 97 42.3
FvH4_2g18091 Fragaria vesca HOM05D000030 ORTHO05D000009 3.9e-11 72.4 154 29.2
RcHm_v2.0_Chr6g0283851 Rosa chinensis HOM05D000030 ORTHO05D000031 5.1e-11 72.0 152 31.6
Lj2C73T8 Lonicera japonica HOM05D011311 ORTHO05D000009 6.6e-11 71.6 125 32.0
RcHm_v2.0_Chr5g0031071 Rosa chinensis HOM05D000030 ORTHO05D000031 3.3e-10 69.3 121 33.9
FvH4_1g29751 Fragaria vesca HOM05D044676 ORTHO05D000031 4.3e-10 68.9 97 40.2
Aqoxy7G02386 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 5.6e-10 68.6 138 30.4
RcHm_v2.0_Chr2g0106891 Rosa chinensis HOM05D000030 ORTHO05D000009 5.6e-10 68.6 121 34.7
RcHm_v2.0_Chr3g0483341 Rosa chinensis HOM05D000030 ORTHO05D000031 5.6e-10 68.6 103 37.9
RcHm_v2.0_Chr2g0116731 Rosa chinensis HOM05D000030 ORTHO05D000031 7.3e-10 68.2 121 33.9
RcHm_v2.0_Chr3g0496341 Rosa chinensis HOM05D000030 ORTHO05D000031 7.3e-10 68.2 131 35.1
FvH4_3g19351 Fragaria vesca HOM05D000030 ORTHO05D000031 1.6e-09 67.0 109 35.8
RcHm_v2.0_Chr6g0268731 Rosa chinensis HOM05D000030 ORTHO05D000009 1.6e-09 67.0 121 32.2
FAN15G0861 Fragaria x ananassa HOM05D000457 ORTHO05D000031 2.1e-09 66.6 129 38.0
RcHm_v2.0_Chr1g0367431 Rosa chinensis HOM05D000030 ORTHO05D000009 2.1e-09 66.6 121 33.1
RcHm_v2.0_Chr7g0205391 Rosa chinensis HOM05D000030 ORTHO05D000009 2.8e-09 66.2 121 33.1
RcHm_v2.0_Chr5g0059011 Rosa chinensis HOM05D000030 ORTHO05D000031 6.2e-09 65.1 99 37.4
FvH4_4g16143 Fragaria vesca HOM05D000030 ORTHO05D000031 8.1e-09 64.7 156 30.1
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 8.1e-09 64.7 154 30.5
RcHm_v2.0_Chr4g0384931 Rosa chinensis HOM05D000030 ORTHO05D000031 1.1e-08 64.3 114 34.2
RcHm_v2.0_Chr1g0315671 Rosa chinensis HOM05D000030 ORTHO05D000009 1.4e-08 63.9 117 35.0
RcHm_v2.0_Chr7g0235371 Rosa chinensis HOM05D000030 ORTHO05D000009 1.4e-08 63.9 90 35.6
RcHm_v2.0_Chr5g0071411 Rosa chinensis HOM05D000030 ORTHO05D000009 2.4e-08 63.2 99 35.4
FvH4_1g21452 Fragaria vesca HOM05D000030 ORTHO05D000031 4.0e-08 62.4 158 29.7
RcHm_v2.0_Chr3g0468991 Rosa chinensis HOM05D000030 ORTHO05D000031 8.9e-08 61.2 80 35.0
EL10Ac7g16631 Beta vulgaris HOM05D000030 ORTHO05D000009 2.0e-07 60.1 112 32.1
FvH4_6g20421 Fragaria vesca HOM05D000030 ORTHO05D000009 2.0e-07 60.1 81 40.7
Hma1.2p1_1202F.1_g266820 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 2.0e-07 60.1 77 39.0
Atru.chr3.4252 Acer truncatum HOM05D000030 ORTHO05D000031 2.6e-07 59.7 125 32.0
AUR62034230 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.6e-07 59.7 98 37.8
Hma1.2p1_0081F.1_g042310 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 2.6e-07 59.7 77 39.0
QL10p008784 Quercus lobata HOM05D000030 ORTHO05D000009 2.6e-07 59.7 79 40.5
FvH4_5g32331 Fragaria vesca HOM05D000030 ORTHO05D000031 4.4e-07 58.9 98 36.7
Hma1.2p1_0123F.1_g057940 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 4.4e-07 58.9 99 35.4
Atru.chr11.1061 Acer truncatum HOM05D000044 ORTHO05D000009 5.8e-07 58.5 103 35.0
Hma1.2p1_0336F.1_g129040 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 5.8e-07 58.5 129 33.3
Atru.chr4.1709 Acer truncatum HOM05D000030 ORTHO05D000009 7.6e-07 58.2 125 32.0
Atru.chr6.1301 Acer truncatum HOM05D000030 ORTHO05D000009 7.6e-07 58.2 132 33.3
RcHm_v2.0_Chr4g0396801 Rosa chinensis HOM05D000030 ORTHO05D000031 7.6e-07 58.2 132 31.1
FvH4_7g01741 Fragaria vesca HOM05D000030 ORTHO05D000031 9.9e-07 57.8 83 33.7
QL09p001102 Quercus lobata HOM05D000030 ORTHO05D003511 9.9e-07 57.8 106 39.6
EL10Ac8g19303 Beta vulgaris HOM05D000030 ORTHO05D000031 1.3e-06 57.4 109 32.1
Atru.chr11.670 Acer truncatum HOM05D000030 ORTHO05D000031 1.7e-06 57.0 82 37.8
ClCG08G002510 Citrullus lanatus HOM05D000030 ORTHO05D000031 1.7e-06 57.0 127 32.3
Hma1.2p1_0180F.1_g079730 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.7e-06 57.0 129 34.1
Hma1.2p1_0536F.1_g174140 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.7e-06 57.0 129 33.3
Rhsim08G0113700 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.7e-06 57.0 84 36.9
RcHm_v2.0_Chr4g0438211 Rosa chinensis HOM05D000030 ORTHO05D000031 1.7e-06 57.0 92 29.3
ECA238G4544 Erigeron canadensis HOM05D000030 ORTHO05D000009 2.2e-06 56.6 71 35.2
FvH4_7g17881 Fragaria vesca HOM05D000030 ORTHO05D000009 2.2e-06 56.6 83 32.5
Lj2C454T1 Lonicera japonica HOM05D008722 ORTHO05D000031 2.2e-06 56.6 81 33.3
Oeu002123.1 Olea europaea HOM05D000030 ORTHO05D000009 2.2e-06 56.6 127 30.7
Atru.chr13.1603 Acer truncatum HOM05D000030 ORTHO05D000009 2.9e-06 56.2 132 33.3
EL10Ac7g17883 Beta vulgaris HOM05D000030 ORTHO05D000031 2.9e-06 56.2 172 26.7
TWI18G0720 Tripterygium wilfordii HOM05D000030 ORTHO05D000031 2.9e-06 56.2 96 29.2
Atru.chr5.1722 Acer truncatum HOM05D000030 ORTHO05D000009 3.8e-06 55.8 105 34.3
Atru.chr1.2072 Acer truncatum HOM05D000030 ORTHO05D000009 4.9e-06 55.5 125 30.4
Atru.chr6.1666 Acer truncatum HOM05D000030 ORTHO05D000031 4.9e-06 55.5 125 33.6
Atru.ctg1438.3 Acer truncatum HOM05D000030 ORTHO05D000009 4.9e-06 55.5 125 31.2
Hma1.2p1_0935F.1_g238560 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 4.9e-06 55.5 99 33.3
Potri.011G125951 Populus trichocarpa HOM05D000030 ORTHO05D000009 4.9e-06 55.5 87 36.8
TPR.G24616 Trifolium pratense HOM05D000030 ORTHO05D000009 4.9e-06 55.5 76 34.2
FvH4_3g31251 Fragaria vesca HOM05D000030 ORTHO05D000031 6.4e-06 55.1 80 32.5
Hma1.2p1_0314F.1_g121830 Hydrangea macrophylla HOM05D000030 ORTHO05D000031 6.4e-06 55.1 113 32.7
TWI34G1402 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 6.4e-06 55.1 119 31.9
Atru.chr4.1208 Acer truncatum HOM05D000030 ORTHO05D000009 8.4e-06 54.7 103 34.0
EL10Ac7g17496 Beta vulgaris HOM05D000030 ORTHO05D000009 8.4e-06 54.7 102 32.4
Hma1.2p1_0348F.1_g131940 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 8.4e-06 54.7 129 33.3
Oeu025113.1 Olea europaea HOM05D000030 ORTHO05D000031 8.4e-06 54.7 107 29.9
Rhsim10G0137500 Rhododendron simsii HOM05D000030 ORTHO05D000031 8.4e-06 54.7 131 30.5


User provided reference genes

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