Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0141371 Rosa chinensis HOM05D000106 ORTHO05D341593 1.4e-30 135.6 65 100.0
FvH4_6g32670 Fragaria vesca HOM05D000106 ORTHO05D000160 2.2e-12 75.1 40 90.0
FvH4_6g33210 Fragaria vesca HOM05D000106 ORTHO05D000160 2.2e-12 75.1 40 90.0
FAN02G1539 Fragaria x ananassa HOM05D000106 ORTHO05D000160 2.2e-12 75.1 40 90.0
FAN09G0237 Fragaria x ananassa HOM05D000106 ORTHO05D000160 2.2e-12 75.1 40 90.0
FAN14G2066 Fragaria x ananassa HOM05D000106 ORTHO05D000160 2.2e-12 75.1 40 90.0
RcHm_v2.0_Chr1g0317541 Rosa chinensis HOM05D000106 ORTHO05D000160 5.0e-12 73.9 40 90.0
Prupe.3G209700 Prunus persica HOM05D000106 ORTHO05D000160 8.7e-09 63.2 36 75.0
RcHm_v2.0_Chr2g0141191 Rosa chinensis HOM05D000106 ORTHO05D000160 8.7e-09 63.2 40 75.0
RcHm_v2.0_Chr2g0141211 Rosa chinensis HOM05D000106 ORTHO05D000160 8.7e-09 63.2 40 75.0
Prupe.3G056000 Prunus persica HOM05D000106 ORTHO05D000160 1.1e-08 62.8 36 75.0
Prupe.3G055400 Prunus persica HOM05D000106 ORTHO05D000160 1.6e-07 58.9 39 71.8
Prupe.3G055800 Prunus persica HOM05D000106 ORTHO05D000160 3.7e-07 57.8 39 69.2
Prupe.3G055500 Prunus persica HOM05D000106 ORTHO05D000160 8.2e-07 56.6 39 66.7
Cfa003620 Carpinus fangiana HOM05D000106 ORTHO05D000160 1.1e-06 56.2 36 69.4
MD09G1199100 Malus domestica HOM05D000106 ORTHO05D000160 1.1e-06 56.2 39 66.7
CANSAT56G0397 Cannabis sativa HOM05D000106 ORTHO05D000160 1.4e-06 55.8 41 61.0
QL05p017828 Quercus lobata HOM05D000106 ORTHO05D000160 1.4e-06 55.8 41 63.4
QL05p017899 Quercus lobata HOM05D000106 ORTHO05D000160 1.4e-06 55.8 37 67.6
Haze_15891 Corylus avellana HOM05D000106 ORTHO05D000160 1.8e-06 55.5 36 72.2
QL05p018011 Quercus lobata HOM05D000106 ORTHO05D000160 1.8e-06 55.5 63 42.9
MD09G1199300 Malus domestica HOM05D000106 ORTHO05D000160 2.4e-06 55.1 39 66.7
Phvul.005G162600 Phaseolus vulgaris HOM05D000106 ORTHO05D000160 2.4e-06 55.1 36 66.7
Phvul.005G164100 Phaseolus vulgaris HOM05D000106 ORTHO05D000160 2.4e-06 55.1 36 66.7
Cfa003624 Carpinus fangiana HOM05D000106 ORTHO05D000160 3.1e-06 54.7 36 66.7
FvH4_6g32660 Fragaria vesca HOM05D000106 ORTHO05D000160 3.1e-06 54.7 40 62.5
FvH4_6g32690 Fragaria vesca HOM05D000106 ORTHO05D000160 3.1e-06 54.7 38 57.9
QL05p017854 Quercus lobata HOM05D000106 ORTHO05D000160 3.1e-06 54.7 40 60.0
RcHm_v2.0_Chr2g0141311 Rosa chinensis HOM05D000106 ORTHO05D000160 3.1e-06 54.7 40 62.5
RcHm_v2.0_Chr2g0141591 Rosa chinensis HOM05D000106 ORTHO05D000160 3.1e-06 54.7 40 62.5
RcHm_v2.0_Chr2g0141661 Rosa chinensis HOM05D000106 ORTHO05D000160 3.1e-06 54.7 39 66.7
CANSAT56G4307 Cannabis sativa HOM05D000106 ORTHO05D000160 4.1e-06 54.3 43 55.8
RcHm_v2.0_Chr2g0141221 Rosa chinensis HOM05D000106 ORTHO05D000160 4.1e-06 54.3 36 66.7
RcHm_v2.0_Chr2g0141481 Rosa chinensis HOM05D000106 ORTHO05D000160 4.1e-06 54.3 36 66.7
Haze_15883 Corylus avellana HOM05D000106 ORTHO05D000160 5.3e-06 53.9 36 69.4
Haze_15894 Corylus avellana HOM05D000106 ORTHO05D000160 5.3e-06 53.9 40 62.5
Haze_15895 Corylus avellana HOM05D000106 ORTHO05D000160 5.3e-06 53.9 40 62.5
Ciclev10026969m.g Citrus clementina HOM05D000106 ORTHO05D000160 6.9e-06 53.5 40 60.0
Phvul.005G164200 Phaseolus vulgaris HOM05D000106 ORTHO05D000160 6.9e-06 53.5 36 63.9
VMungo1080G0135 Vigna mungo HOM05D000106 ORTHO05D000160 6.9e-06 53.5 36 63.9
GSVIVG01016936001 Vitis vinifera HOM05D000106 ORTHO05D000160 6.9e-06 53.5 37 62.2
GSVIVG01016937001 Vitis vinifera HOM05D000106 ORTHO05D000160 6.9e-06 53.5 37 62.2
Lj9A516T100 Lonicera japonica HOM05D000106 ORTHO05D000160 9.0e-06 53.1 46 54.3
Phvul.005G163800 Phaseolus vulgaris HOM05D000106 ORTHO05D000160 9.0e-06 53.1 35 65.7
RcHm_v2.0_Chr2g0141611 Rosa chinensis HOM05D000106 ORTHO05D000160 9.0e-06 53.1 39 64.1


User provided reference genes

Program Settings