Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 1.1e-151 540.0 286 100.0
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 7.7e-49 198.4 191 60.2
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 5.7e-44 182.2 185 59.5
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 4.5e-41 172.6 242 48.3
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.7e-35 154.1 269 42.4
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 2.2e-35 153.7 196 51.5
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.7e-30 136.7 208 44.2
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.0e-29 134.8 209 43.5
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 2.3e-29 133.7 221 45.7
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 2.8e-27 126.7 193 45.1
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 8.2e-27 125.2 203 45.8
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 4.1e-26 122.9 240 40.8
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 3.5e-25 119.8 218 39.0
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 4.2e-23 112.8 197 43.7
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 4.2e-23 112.8 200 44.5
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.2e-23 112.8 150 46.7
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 5.5e-23 112.5 217 40.1
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 8.0e-22 108.6 176 43.2
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 1.8e-21 107.5 167 50.9
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 3.0e-21 106.7 201 37.3
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 1.5e-20 104.4 153 44.4
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 2.0e-20 104.0 181 41.4
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 5.7e-20 102.4 205 39.0
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.7e-19 100.9 205 39.0
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 2.4e-18 97.1 202 39.6
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 5.4e-18 95.9 147 48.3
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 1.6e-17 94.4 198 37.9
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.0e-17 94.0 168 39.3
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 2.7e-17 93.6 208 38.5
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 2.7e-17 93.6 219 38.4
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 4.5e-17 92.8 216 37.5
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.3e-16 91.3 203 37.4
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 2.9e-16 90.1 195 39.5
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 1.1e-15 88.2 185 40.0
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 1.9e-15 87.4 141 44.7
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 9.5e-15 85.1 231 35.1
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.2e-14 84.7 204 32.8
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 3.6e-14 83.2 142 40.1
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 8.0e-14 82.0 178 38.8
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 1.0e-13 81.6 218 33.9
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 1.4e-13 81.3 212 34.4
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.3e-13 80.5 164 39.0
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 6.8e-13 79.0 202 33.7
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.2e-12 78.2 145 40.0
Migut.I00959 Erythranthe guttata HOM05D008208 ORTHO05D010143 2.6e-12 77.0 128 43.8
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 3.4e-12 76.6 166 39.8
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 5.7e-12 75.9 217 33.6
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 7.5e-12 75.5 163 38.7
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 4.9e-11 72.8 183 39.9
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 4.9e-11 72.8 225 33.3
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 6.3e-11 72.4 135 37.0
Aqoxy1G02129 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 8.3e-11 72.0 170 34.7
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 8.3e-11 72.0 173 35.8
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 1.4e-10 71.2 191 34.6
ECA232G2142 Erigeron canadensis HOM05D008208 ORTHO05D010143 2.4e-10 70.5 104 43.3
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 2.4e-10 70.5 177 38.4
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 4.1e-10 69.7 190 37.4
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 7.0e-10 68.9 176 32.4
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 7.0e-10 68.9 152 35.5
Aqoxy1G02121 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 2.7e-09 67.0 118 39.8
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 4.5e-09 66.2 180 33.3
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 2.3e-08 63.9 167 34.7
CDE05G0720 Ceratophyllum demersum HOM05D008208 ORTHO05D010143 2.3e-08 63.9 46 63.0
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.5e-07 61.2 216 29.2
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 2.5e-07 60.5 141 40.4
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.5e-07 60.5 261 29.5
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.5e-07 60.5 261 29.5
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 4.3e-07 59.7 137 34.3
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 4.3e-07 59.7 221 29.4
Os01g0765500 Oryza sativa ssp. japonica HOM05D020829 ORTHO05D023022 5.6e-07 59.3 83 43.4
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 7.3e-07 58.9 184 31.5
Lsat_1_v5_gn_5_134320 Lactuca sativa HOM05D008208 ORTHO05D010143 7.3e-07 58.9 105 35.2
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 7.3e-07 58.9 180 31.7
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 9.5e-07 58.5 202 30.7
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 1.6e-06 57.8 85 42.4
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 3.6e-06 56.6 194 30.9
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 3.6e-06 56.6 81 44.4
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 4.7e-06 56.2 171 32.7
Zm00001eb204070 Zea mays HOM05D020829 ORTHO05D023022 6.1e-06 55.8 61 47.5
Zm00001eb204100 Zea mays HOM05D020829 ORTHO05D023022 6.1e-06 55.8 61 47.5
Zm00001eb404480 Zea mays HOM05D020829 ORTHO05D023022 6.1e-06 55.8 85 40.0
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 8.0e-06 55.5 209 29.2
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 8.0e-06 55.5 175 30.3
Zm00001eb370260 Zea mays HOM05D020829 ORTHO05D023022 8.0e-06 55.5 96 38.5


User provided reference genes

Program Settings