Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.5e-256 889.0 453 100.0
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.3e-196 689.9 457 81.0
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.1e-193 680.2 457 80.3
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.3e-191 673.3 457 79.4
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.2e-182 642.1 459 76.9
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.6e-171 604.7 464 72.6
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 4.2e-134 482.3 503 57.9
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.3e-127 460.7 497 56.1
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 1.7e-127 460.3 499 56.1
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 3.4e-99 366.3 510 48.6
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 2.3e-95 353.6 510 47.6
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 3.8e-95 352.8 511 46.4
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 1.7e-90 337.4 514 47.3
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.3e-87 327.8 518 45.4
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 8.6e-87 325.1 431 49.9
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 8.6e-87 325.1 515 45.4
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 8.0e-85 318.5 489 43.6
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 5.2e-84 315.8 502 46.2
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 2.0e-83 313.9 496 44.8
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 3.7e-82 309.7 514 44.6
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 2.4e-81 307.0 487 45.4
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 3.2e-81 306.6 517 43.1
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 3.2e-81 306.6 500 45.2
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 1.6e-80 304.3 497 44.5
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 7.8e-80 302.0 510 42.9
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.3e-79 301.2 509 44.6
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 5.1e-79 299.3 507 43.0
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 7.3e-78 295.4 511 44.0
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 5.2e-76 289.3 502 44.2
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 5.2e-76 289.3 502 44.2
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 8.9e-76 288.5 509 42.6
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 7.5e-75 285.4 460 43.7
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 6.4e-74 282.3 510 40.4
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 1.1e-73 281.6 491 42.0
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.9e-73 280.8 504 42.7
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 5.4e-73 279.3 502 43.6
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 5.4e-73 279.3 500 43.2
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 7.1e-73 278.9 500 43.0
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 7.1e-73 278.9 517 41.6
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 9.2e-73 278.5 518 42.1
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 3.5e-72 276.6 507 41.6
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 7.8e-72 275.4 502 43.0
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 1.0e-71 275.0 488 41.6
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.1e-68 265.0 521 40.3
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 3.1e-68 263.5 464 41.8
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 1.4e-65 254.6 443 41.1
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.0e-63 248.4 496 37.9
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 1.7e-63 247.7 539 39.0
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 1.7e-63 247.7 468 40.2
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 2.5e-62 243.8 477 40.0
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 5.6e-62 242.7 465 41.7
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 9.6e-62 241.9 473 39.7
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 2.8e-61 240.4 496 37.1
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 3.6e-61 240.0 506 37.9
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 4.7e-61 239.6 543 37.6
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 5.3e-60 236.1 410 41.7
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 4.4e-59 233.0 436 41.7
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 4.4e-59 233.0 441 39.7
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 6.4e-58 229.2 502 38.2
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 3.2e-57 226.9 502 37.1
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 3.2e-57 226.9 501 38.7
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.2e-57 226.5 476 40.3
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.2e-57 226.5 476 40.3
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 4.2e-57 226.5 514 37.0
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 2.3e-55 220.7 496 36.1
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 8.7e-55 218.8 538 35.9
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 4.3e-54 216.5 484 37.4
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 5.6e-54 216.1 496 36.5
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 9.6e-54 215.3 502 35.9
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 8.1e-53 212.2 457 40.3
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 1.8e-52 211.1 526 34.6
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 2.4e-52 210.7 476 36.3
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 2.4e-52 210.7 494 35.8
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 1.2e-51 208.4 421 38.7
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 1.2e-51 208.4 442 39.1
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 2.6e-51 207.2 499 36.5
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 4.5e-51 206.5 457 38.5
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.4e-49 201.4 498 32.9
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 4.2e-49 199.9 427 38.4
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.6e-48 198.0 501 36.3
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.7e-48 197.2 508 36.8
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 3.5e-48 196.8 537 34.3
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 1.3e-47 194.9 497 34.0
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 3.9e-47 193.4 441 35.4
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 5.1e-47 193.0 428 38.3
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 3.3e-46 190.3 544 33.6
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 4.0e-44 183.3 441 36.3
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 4.0e-44 183.3 433 35.3
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 5.3e-44 183.0 497 34.6
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 9.0e-44 182.2 444 34.5
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 9.0e-44 182.2 444 34.5
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 9.0e-44 182.2 444 34.5
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 9.0e-44 182.2 463 34.3
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 3.4e-43 180.3 461 35.6
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 1.3e-42 178.3 438 33.8
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 1.1e-41 175.3 453 35.1
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 2.5e-41 174.1 450 33.6
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 7.1e-41 172.6 469 32.4
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.6e-40 171.4 458 35.4
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 8.7e-39 165.6 484 33.5
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 8.7e-39 165.6 472 32.0
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.5e-38 164.9 470 31.9
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 1.3e-37 161.8 332 37.7
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 9.7e-30 135.6 490 30.2
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.0e-23 115.5 218 43.1
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 7.4e-22 109.4 293 32.8
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.3e-21 108.6 428 30.6
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.2e-17 94.0 223 35.4
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 7.2e-17 92.8 147 38.8
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.6e-14 84.3 199 34.2
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.7e-13 81.6 129 40.3
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 3.7e-13 80.5 331 30.2
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 2.0e-11 74.7 195 32.8
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 7.2e-09 66.2 75 42.7
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 7.4e-06 56.2 110 35.5


User provided reference genes

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