Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 2222.6 1147 100.0
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1966.4 1151 88.6
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1926.8 1124 88.8
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1835.8 1066 89.2
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1707.2 1161 76.7
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1692.2 1043 86.2
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1639.0 1151 75.0
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1572.8 954 85.6
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1349.7 1150 62.0
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1339.3 1145 61.6
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1312.4 1222 58.7
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1310.0 1153 60.0
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1310.0 1151 60.0
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1303.9 1155 59.6
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1297.3 1151 60.4
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1291.2 1164 59.6
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1286.6 1158 59.6
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1271.1 1151 59.3
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1247.3 1150 57.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1238.0 1153 57.6
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1234.6 1153 58.1
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1231.5 1152 56.8
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1217.6 1155 57.2
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1206.0 1154 56.1
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1198.3 1159 55.7
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1181.0 1157 54.2
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1180.2 1148 54.4
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1179.1 1154 52.9
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1175.6 1153 54.0
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1175.2 1149 55.4
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1170.6 1152 54.2
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1168.7 1155 54.3
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1166.0 1217 52.3
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1157.5 1150 54.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1156.4 1150 54.8
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1142.5 1152 54.3
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1142.5 1153 53.0
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1136.7 1153 52.9
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1131.3 1153 53.2
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1122.8 1151 51.9
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1122.1 1112 54.5
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1114.0 1153 52.0
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1113.2 1105 54.8
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1110.9 1150 53.0
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1103.6 1146 52.3
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1101.7 1104 53.1
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1093.6 1151 50.3
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1092.8 1156 50.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1090.9 1146 52.2
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1077.0 1156 50.3
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 7.8e-312 1073.5 1154 50.9
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 5.0e-309 1064.7 1147 50.3
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 6.6e-309 1064.3 1146 50.3
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 6.8e-306 1054.3 1153 51.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 2.2e-304 1049.3 1143 49.7
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 8.3e-304 1047.3 1154 48.7
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.2e-302 1043.5 1143 49.9
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.3e-301 1039.3 1157 49.5
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 8.0e-299 1030.8 1228 48.0
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 4.0e-298 1028.5 1132 48.7
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.7e-296 1023.1 1021 53.1
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.8e-291 1005.7 1151 48.5
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 3.1e-290 1002.3 1154 48.5
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 8.9e-290 1000.7 1144 49.0
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.6e-289 999.2 1146 48.4
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1143 47.9
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.2e-286 990.3 1151 47.6
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 2.1e-286 989.6 1148 47.8
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.5e-284 982.6 1149 48.3
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.3e-284 982.2 1149 47.8
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.6e-283 979.9 1100 50.1
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 6.2e-283 978.0 1150 48.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.3e-282 976.1 1149 48.1
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.3e-282 976.1 1150 48.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.8e-282 974.5 1147 48.0
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 5.8e-281 971.5 1097 49.6
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.9e-280 969.1 1147 46.7
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.9e-276 956.4 1149 46.4
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 9.6e-276 954.1 1151 46.4
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 7.6e-273 944.5 1153 46.3
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.1e-268 930.6 1146 45.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 9.6e-268 927.5 1170 44.8
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.5e-260 903.7 1075 47.0
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.2e-256 889.8 1033 48.0
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 7.9e-254 881.3 1111 44.4
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.1e-252 877.5 1145 44.3
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 5.8e-249 865.1 933 51.0
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.3e-245 854.0 1070 44.8
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.5e-241 840.5 1163 41.4
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.2e-240 836.6 1168 42.0
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.1e-236 824.3 922 49.2
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.9e-236 823.5 1162 42.2
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 5.3e-234 815.5 1145 42.4
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 6.1e-214 748.8 951 44.3
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.9e-168 596.7 1058 37.6
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 5.4e-146 523.1 1193 31.8
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.9e-138 498.0 646 43.8
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.0e-128 464.2 445 56.4
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 4.8e-126 456.8 1199 29.9
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 2.2e-118 431.4 511 47.2
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.0e-115 422.5 523 44.7
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.1e-113 414.8 692 37.1
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.7e-112 409.8 437 51.0
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.4e-106 392.1 441 51.2
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.0e-104 386.0 337 57.6
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.7e-102 378.6 1139 27.7
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.4e-93 348.2 435 46.0
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.2e-86 325.1 233 68.7
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.9e-69 268.9 232 59.9
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.8e-63 246.5 322 47.5
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-62 246.1 199 64.8
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.3e-59 236.1 268 50.7
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 3.3e-58 231.5 1297 24.1
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 3.1e-56 224.9 315 45.7
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.6e-55 221.9 154 66.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 9.9e-55 219.9 251 47.8
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.5e-52 211.5 180 58.9
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 6.6e-43 180.6 196 51.5
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.9e-38 164.5 159 52.2
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.2e-36 159.8 118 68.6
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 4.8e-33 147.9 173 43.4
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.7e-28 132.1 121 57.0
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.3e-27 129.8 123 52.0
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 2.3e-27 129.0 134 53.7
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 5.1e-27 127.9 283 33.2
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 1.9e-26 125.9 96 67.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.3e-26 124.8 176 42.0
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.1e-25 122.5 121 51.2
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 2.1e-25 122.5 150 47.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 2.1e-25 122.5 150 47.3
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 8.1e-25 120.6 96 62.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 8.1e-25 120.6 96 62.5
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 3.1e-24 118.6 180 42.8
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.1e-24 118.6 116 51.7
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 4.9e-22 111.3 348 27.3
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 5.5e-21 107.8 93 62.4
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 5.1e-19 101.3 64 60.9
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 6.7e-19 100.9 128 41.4
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.8e-16 92.8 75 64.0
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 4.5e-15 88.2 90 47.8
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 3.8e-14 85.1 151 32.5
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 1.9e-13 82.8 57 66.7
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 2.5e-13 82.4 107 46.7
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 7.1e-13 80.9 55 70.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 7.1e-13 80.9 73 61.6
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.3e-11 75.9 90 48.9
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 2.5e-10 72.4 92 43.5
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.1e-08 65.5 64 46.9
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.2e-07 63.5 68 44.1


User provided reference genes

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