Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 5.7e-20 99.8 44 100.0
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.3e-13 77.8 43 79.1
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 2.3e-13 77.8 43 79.1
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-13 77.8 43 79.1
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-13 77.8 43 79.1
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-13 77.8 43 79.1
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-13 77.8 43 79.1
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 2.3e-13 77.8 43 79.1
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 4.0e-13 77.0 43 76.7
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.8e-13 75.9 43 76.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 8.8e-13 75.9 43 76.7
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.2e-12 75.5 43 76.7
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-12 75.5 43 76.7
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.5e-12 75.1 42 78.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.5e-12 75.1 42 78.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.0e-12 74.7 43 72.1
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 2.0e-12 74.7 43 72.1
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.0e-12 74.7 43 72.1
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.6e-12 74.3 43 74.4
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.6e-12 74.3 43 74.4
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.6e-12 74.3 43 74.4
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.6e-12 74.3 43 74.4
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.4e-12 73.9 43 74.4
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 4.4e-12 73.6 43 72.1
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 4.4e-12 73.6 43 72.1
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 4.4e-12 73.6 43 72.1
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 4.4e-12 73.6 43 72.1
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 4.4e-12 73.6 43 72.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 7.5e-12 72.8 43 69.8
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 7.5e-12 72.8 42 73.8
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 9.8e-12 72.4 43 72.1
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 9.8e-12 72.4 43 72.1
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 9.8e-12 72.4 43 72.1
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.3e-11 72.0 43 72.1
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.7e-11 71.6 43 69.8
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.7e-11 71.6 42 76.2
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.2e-11 71.2 43 69.8
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.2e-11 71.2 43 69.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.2e-11 71.2 43 72.1
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 2.2e-11 71.2 42 73.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 2.2e-11 71.2 42 73.8
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 2.2e-11 71.2 43 69.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.2e-11 71.2 43 69.8
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 2.8e-11 70.9 43 69.8
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.8e-11 70.9 42 73.8
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 3.7e-11 70.5 43 69.8
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 3.7e-11 70.5 43 72.1
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 3.7e-11 70.5 43 69.8
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 4.8e-11 70.1 42 71.4
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 4.8e-11 70.1 43 69.8
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.3e-11 69.7 43 69.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.3e-11 69.7 43 69.8
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 6.3e-11 69.7 43 67.4
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.3e-11 69.7 43 69.8
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.3e-11 69.7 43 69.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 6.3e-11 69.7 43 69.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.3e-11 69.7 42 71.4
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.3e-11 69.7 42 71.4
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-10 68.9 43 67.4
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-10 68.9 43 67.4
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.1e-10 68.9 43 67.4
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-10 68.9 43 67.4
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-10 68.9 43 67.4
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.1e-10 68.9 43 67.4
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.1e-10 68.9 42 71.4
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-10 68.9 43 67.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.4e-10 68.6 43 69.8
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.4e-10 68.6 43 69.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.8e-10 68.2 43 67.4
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.8e-10 68.2 42 69.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.8e-10 68.2 43 67.4
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.8e-10 68.2 43 67.4
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.8e-10 68.2 43 67.4
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.4e-10 67.8 43 67.4
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 3.1e-10 67.4 43 65.1
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 3.1e-10 67.4 43 67.4
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.1e-10 67.4 43 67.4
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.1e-10 67.4 43 65.1
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 4.1e-10 67.0 42 69.0
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.1e-10 67.0 42 69.0
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 5.4e-10 66.6 43 67.4
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 7.0e-10 66.2 42 69.0
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 7.0e-10 66.2 43 65.1
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 9.1e-10 65.9 43 67.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 66.7
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 66.7
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 66.7
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 66.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 66.7
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 64.3
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-09 65.5 31 87.1
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-09 65.5 31 87.1
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 66.7
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-09 65.5 42 66.7
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.6e-09 65.1 43 62.8
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-09 65.1 43 62.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-09 65.1 43 62.8
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.6e-09 65.1 43 67.4
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.7e-09 64.3 42 66.7
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 3.5e-09 63.9 42 64.3
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.5e-09 63.9 43 65.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.5e-09 63.9 43 60.5
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.5e-09 63.5 30 93.3
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.5e-09 63.5 30 93.3
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 4.5e-09 63.5 31 83.9
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 4.5e-09 63.5 31 83.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.0e-08 62.4 42 64.3
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.3e-08 62.0 42 61.9
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.7e-08 61.6 42 61.9
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.7e-08 61.6 42 61.9
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.7e-08 61.6 42 61.9
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.7e-08 61.6 42 61.9
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.2e-08 61.2 31 80.6
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.2e-08 61.2 31 80.6
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.2e-08 61.2 31 83.9
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.2e-08 61.2 31 80.6
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.2e-08 61.2 31 83.9
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.2e-08 61.2 31 80.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.2e-08 61.2 31 80.6
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.8e-08 60.5 43 60.5
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.0e-08 60.1 30 90.0
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.0e-08 60.1 43 55.8
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 6.5e-08 59.7 42 61.9
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 8.5e-08 59.3 42 59.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 8.5e-08 59.3 37 67.6
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.5e-07 58.5 42 61.9
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.5e-07 58.5 42 61.9
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.9e-07 58.2 42 59.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.9e-07 58.2 42 59.5
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.9e-07 58.2 31 77.4
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.9e-07 58.2 42 59.5
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.5e-07 57.8 31 77.4
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.5e-07 57.8 31 77.4
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.2e-07 57.4 42 59.5
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 4.2e-07 57.0 31 77.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.5e-07 56.6 42 61.9
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 7.2e-07 56.2 31 71.0
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.2e-06 55.5 43 48.8
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 3.6e-06 53.9 43 53.5
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 6.1e-06 53.1 43 51.2
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 6.1e-06 53.1 43 51.2
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 6.1e-06 53.1 43 51.2


User provided reference genes

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