Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139931 Rosa chinensis HOM05D000454 ORTHO05D002637 6.1e-64 247.3 121 100.0
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 6.1e-40 167.5 115 73.9
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 6.1e-40 167.5 115 73.9
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 4.4e-38 161.4 115 69.6
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 3.1e-23 112.1 108 50.9
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.1e-20 103.6 56 91.1
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 1.9e-20 102.8 113 42.5
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 3.2e-20 102.1 80 62.5
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 2.7e-19 99.0 114 43.9
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 6.0e-19 97.8 113 40.7
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 6.0e-19 97.8 113 40.7
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.0e-18 95.5 113 39.8
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 3.9e-18 95.1 114 40.4
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 8.6e-18 94.0 94 48.9
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 1.9e-17 92.8 107 41.1
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 4.3e-17 91.7 60 73.3
arahy.Tifrunner.gnm1.ann1.A9YK01 Arachis hypogaea HOM05D000454 ORTHO05D002637 9.5e-17 90.5 107 38.3
arahy.Tifrunner.gnm1.ann1.N3KGB9 Arachis hypogaea HOM05D000454 ORTHO05D002637 9.5e-17 90.5 107 38.3
FvH4_6g32122 Fragaria vesca HOM05D000454 ORTHO05D002637 8.1e-16 87.4 44 95.5
Ciclev10027021m.g Citrus clementina HOM05D000454 ORTHO05D002637 3.4e-14 82.0 81 51.9
ClCG07G013260 Citrullus lanatus HOM05D000454 ORTHO05D002637 7.5e-14 80.9 87 44.8
RcHm_v2.0_Chr2g0139951 Rosa chinensis HOM05D000454 ORTHO05D002637 1.9e-12 76.3 57 61.4
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 1.2e-11 73.6 57 59.6
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.1e-11 72.8 52 67.3
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 6.0e-11 71.2 94 36.2
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 7.8e-11 70.9 82 36.6
Manes.09G150800 Manihot esculenta HOM05D000264 ORTHO05D000152 3.9e-10 68.6 114 35.1
Actinidia39146 Actinidia chinensis HOM05D000454 ORTHO05D002637 9.5e-09 63.9 89 40.4
CSS0046265 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 1.2e-08 63.5 133 30.1
TAR383G0881 Trochodendron aralioides HOM05D000454 ORTHO05D002637 1.2e-08 63.5 69 40.6
Nn2g11640 Nelumbo nucifera HOM05D000454 ORTHO05D002637 1.6e-08 63.2 57 52.6
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 1.6e-08 63.2 57 50.9
Dinv37996 Davidia involucrata HOM05D000454 ORTHO05D002637 4.7e-08 61.6 57 49.1
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 1.4e-07 60.1 59 44.1
AUR62031881 Chenopodium quinoa HOM05D000454 ORTHO05D002637 1.4e-07 60.1 109 32.1
Rhsim09G0108700 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.4e-07 60.1 119 26.9
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.8e-07 59.7 57 47.4
vmacro04094 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 1.8e-07 59.7 134 26.9
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 2.3e-07 59.3 57 47.4
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 3.1e-07 58.9 57 50.9
Carub.0006s3359 Capsella rubella HOM05D000264 ORTHO05D000152 4.0e-07 58.5 70 40.0
Lj3A730T42 Lonicera japonica HOM05D000264 ORTHO05D000152 4.0e-07 58.5 72 40.3
Lj3C731T3 Lonicera japonica HOM05D000264 ORTHO05D000152 4.0e-07 58.5 72 38.9
SEGI_32118 Sequoiadendron giganteum HOM05D034681 ORTHO05D000152 4.0e-07 58.5 88 35.2
Aqoxy1G04212 Aquilegia oxysepala HOM05D000264 ORTHO05D000152 5.2e-07 58.2 96 28.1
Lj3A730T43 Lonicera japonica HOM05D000264 ORTHO05D000152 5.2e-07 58.2 72 38.9
BcaC02g08540 Brassica carinata HOM05D020930 ORTHO05D002637 6.8e-07 57.8 117 34.2
C04p53180 Brassica napus HOM05D020930 ORTHO05D002637 6.8e-07 57.8 117 34.2
BolC4t26874H Brassica oleracea HOM05D020930 ORTHO05D002637 6.8e-07 57.8 117 34.2
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 6.8e-07 57.8 58 43.1
Sed0028147 Sechium edule HOM05D000454 ORTHO05D002637 6.8e-07 57.8 101 32.7
Cc05_g06990 Coffea canephora HOM05D000264 ORTHO05D000152 8.9e-07 57.4 87 33.3
COL.COLO4_10465 Corchorus olitorius HOM05D000264 ORTHO05D000152 8.9e-07 57.4 112 31.2
vmacro12293 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 1.2e-06 57.0 110 32.7
GSVIVG01013569001 Vitis vinifera HOM05D000264 ORTHO05D000152 1.2e-06 57.0 111 29.7
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 1.5e-06 56.6 57 49.1
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 1.5e-06 56.6 55 50.9
vmacro22812 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 1.5e-06 56.6 110 32.7
AUR62036995 Chenopodium quinoa HOM05D007624 ORTHO05D013505 2.0e-06 56.2 127 29.9
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.0e-06 56.2 59 42.4
Rhsim04G0191900 Rhododendron simsii HOM05D000264 ORTHO05D000152 2.0e-06 56.2 70 32.9
vmacro12291 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 2.0e-06 56.2 117 30.8
Hma1.2p1_0446F.1_g154550 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.6e-06 55.8 111 27.9
Hma1.2p1_0446F.1_g154555 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.6e-06 55.8 111 27.9
SEGI_04762 Sequoiadendron giganteum HOM05D000264 ORTHO05D000152 2.6e-06 55.8 97 30.9
vmacro12290 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 2.6e-06 55.8 105 33.3
Ciclev10019036m.g Citrus clementina HOM05D000097 ORTHO05D000041 3.4e-06 55.5 86 30.2
Dinv14025 Davidia involucrata HOM05D000001 ORTHO05D000003 3.4e-06 55.5 73 34.2
Prupe.4G203800 Prunus persica HOM05D000264 ORTHO05D000152 3.4e-06 55.5 113 29.2
Rhsim06G0144500 Rhododendron simsii HOM05D000264 ORTHO05D000152 3.4e-06 55.5 93 33.3
Sed0021062 Sechium edule HOM05D000454 ORTHO05D002637 3.4e-06 55.5 54 42.6
A02p13600 Brassica napus HOM05D000264 ORTHO05D000152 4.4e-06 55.1 116 30.2
BraA02t06419Z Brassica rapa HOM05D000264 ORTHO05D000152 4.4e-06 55.1 116 30.2
Dinv14029 Davidia involucrata HOM05D000264 ORTHO05D000152 4.4e-06 55.1 73 34.2
Dinv44627 Davidia involucrata HOM05D000264 ORTHO05D000152 4.4e-06 55.1 72 38.9
Rhsim04G0191500 Rhododendron simsii HOM05D000264 ORTHO05D000152 4.4e-06 55.1 73 37.0
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 4.4e-06 55.1 56 46.4
vmacro12288 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 4.4e-06 55.1 75 37.3
CSS0035240 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 5.8e-06 54.7 93 32.3
Carub.0007s2784 Capsella rubella HOM05D000264 ORTHO05D000152 5.8e-06 54.7 123 27.6
Lsat_1_v5_gn_4_101080 Lactuca sativa HOM05D000454 ORTHO05D002637 5.8e-06 54.7 108 26.9
Lsat_1_v5_gn_4_99840 Lactuca sativa HOM05D000454 ORTHO05D002637 5.8e-06 54.7 57 43.9
Manes.16G072800 Manihot esculenta HOM05D000454 ORTHO05D002637 5.8e-06 54.7 62 46.8
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 5.8e-06 54.7 58 46.6
Rhsim05G0056400 Rhododendron simsii HOM05D000264 ORTHO05D000152 5.8e-06 54.7 74 35.1
Sed0002239 Sechium edule HOM05D000454 ORTHO05D002637 5.8e-06 54.7 95 29.5
vmacro12289 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 5.8e-06 54.7 90 34.4
EL10Ac8g19123 Beta vulgaris HOM05D007624 ORTHO05D013505 7.6e-06 54.3 66 40.9
COL.COLO4_14819 Corchorus olitorius HOM05D002192 ORTHO05D002173 7.6e-06 54.3 106 30.2
Lj6A655T45 Lonicera japonica HOM05D000264 ORTHO05D000152 7.6e-06 54.3 102 30.4
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 7.6e-06 54.3 60 43.3
Rhsim06G0145000 Rhododendron simsii HOM05D000264 ORTHO05D000152 7.6e-06 54.3 93 34.4
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 7.6e-06 54.3 57 45.6
GSVIVG01001636001 Vitis vinifera HOM05D000264 ORTHO05D000152 7.6e-06 54.3 75 37.3
Dinv01345 Davidia involucrata HOM05D000264 ORTHO05D000152 9.9e-06 53.9 61 44.3
Lsat_1_v5_gn_4_101120 Lactuca sativa HOM05D000454 ORTHO05D002637 9.9e-06 53.9 100 30.0
Lj3A793T36 Lonicera japonica HOM05D000264 ORTHO05D000152 9.9e-06 53.9 73 34.2
Rhsim06G0144200 Rhododendron simsii HOM05D000264 ORTHO05D000152 9.9e-06 53.9 93 34.4


User provided reference genes

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