Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 0.0e+00 1155.6 594 100.0
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 5.8e-192 674.9 611 62.4
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.0e-188 664.1 600 61.8
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 6.6e-188 661.4 600 61.7
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.6e-187 657.5 600 61.7
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.4e-182 643.7 600 60.3
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 5.1e-180 635.2 605 61.7
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 1.3e-175 620.5 606 57.9
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 4.6e-173 612.1 607 57.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 5.1e-172 608.6 608 57.1
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 6.7e-172 608.2 615 56.3
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.5e-171 606.3 611 56.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.3e-167 594.0 605 55.5
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 6.5e-167 591.7 609 56.0
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 3.9e-164 582.4 605 53.4
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.1e-163 580.9 605 53.7
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 2.8e-162 576.2 600 54.5
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 3.1e-161 572.8 604 54.3
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 4.1e-161 572.4 607 53.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 5.3e-161 572.0 608 53.9
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 6.9e-161 571.6 638 54.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 5.9e-160 568.5 598 55.0
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 4.2e-158 562.4 607 54.0
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 7.2e-158 561.6 597 54.6
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.2e-157 560.8 530 60.8
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 3.6e-157 559.3 610 53.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 3.6e-157 559.3 607 52.7
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.0e-156 557.8 610 54.1
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.8e-156 557.0 592 55.4
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 4.3e-155 552.4 607 52.6
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 7.4e-155 551.6 601 54.1
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.3e-154 550.8 603 53.9
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.8e-153 547.0 605 52.2
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 4.1e-153 545.8 610 52.5
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.6e-152 543.1 606 51.7
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.4e-152 542.7 604 52.2
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.5e-152 542.3 605 52.2
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.3e-151 540.8 651 51.0
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.9e-151 539.7 616 52.4
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 2.9e-151 539.7 607 50.9
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 5.0e-151 538.9 530 58.3
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.9e-150 537.0 606 50.3
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.1e-149 533.5 598 50.3
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 2.7e-149 533.1 600 51.5
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 4.6e-149 532.3 604 53.0
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 4.6e-149 532.3 606 52.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.6e-149 532.3 607 51.7
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.0e-148 531.2 530 56.2
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 2.3e-148 530.0 610 50.7
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 2.3e-148 530.0 533 56.5
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 5.1e-148 528.9 608 51.2
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 5.1e-148 528.9 606 50.8
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 5.1e-148 528.9 626 51.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 8.8e-148 528.1 605 52.7
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 8.8e-148 528.1 605 52.7
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 8.8e-148 528.1 605 52.7
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 2.0e-147 526.9 609 52.4
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 5.7e-147 525.4 604 51.7
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 7.4e-147 525.0 599 49.6
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 7.4e-147 525.0 608 51.6
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.8e-146 523.1 604 51.5
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 3.7e-146 522.7 597 50.6
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 5.0e-143 512.3 634 47.9
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 8.5e-143 511.5 604 49.0
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.2e-141 507.7 599 48.2
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 6.1e-141 505.4 600 49.3
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.8e-140 503.8 608 49.8
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.3e-138 497.7 599 47.7
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 6.3e-138 495.4 553 53.3
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 6.3e-138 495.4 609 47.9
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 4.1e-137 492.7 494 55.7
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.6e-136 490.7 603 47.1
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 2.0e-136 490.3 595 47.7
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 2.9e-135 486.5 601 49.1
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 5.0e-135 485.7 611 48.9
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 2.1e-133 480.3 609 46.5
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 4.7e-133 479.2 606 46.7
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.0e-132 476.1 505 52.3
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.0e-132 476.1 525 51.8
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 8.8e-132 474.9 525 51.6
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 7.5e-131 471.9 601 47.6
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.8e-129 467.2 603 49.1
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 3.1e-129 466.5 490 55.1
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 3.1e-129 466.5 628 45.4
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.8e-127 459.5 530 49.6
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 5.0e-127 459.1 437 59.7
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.1e-125 453.8 604 45.2
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 4.7e-125 452.6 559 48.1
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 6.1e-125 452.2 459 56.4
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 4.8e-122 442.6 597 42.9
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.2e-120 438.0 608 43.8
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.0e-119 434.9 598 43.6
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-119 434.5 587 46.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.0e-112 410.6 438 53.9
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 6.6e-111 405.6 600 44.3
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.8e-101 373.6 360 54.7
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.3e-100 370.5 558 43.4
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.2e-98 364.0 651 38.4
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 7.3e-94 349.0 453 45.9
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.9e-84 315.5 365 56.2
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.3e-79 300.8 368 50.3
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 5.1e-79 299.7 559 41.5
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.9e-78 297.7 404 49.5
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.5e-67 261.5 399 45.4
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 4.5e-67 260.0 604 31.6
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 3.0e-63 247.3 498 36.1
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 3.0e-63 247.3 498 36.1
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 6.7e-63 246.1 602 30.1
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 6.4e-58 229.6 365 41.1
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.6e-56 224.9 491 32.2
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 2.5e-54 217.6 593 28.2
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 2.5e-49 201.1 295 44.1
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 5.5e-49 199.9 405 36.0
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.8e-45 187.6 231 44.6
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 3.0e-39 167.5 228 41.2
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.9e-38 164.9 228 40.8
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 2.1e-32 144.8 140 54.3
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 5.7e-30 136.7 139 58.3
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.7e-27 126.3 157 49.7
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.4e-25 122.1 396 26.5
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.0e-23 115.9 263 35.4
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 5.2e-23 113.6 180 40.0
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 3.3e-22 110.9 154 46.1
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 2.4e-20 104.8 224 36.6
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 3.5e-19 100.9 131 44.3
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 3.5e-19 100.9 131 38.2
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 3.8e-18 97.4 111 49.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 9.4e-17 92.8 224 36.2
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.1e-16 91.7 304 28.3
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.5e-10 69.7 65 58.5
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-09 68.9 70 44.3
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 3.2e-09 67.8 81 43.2
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.2e-09 67.4 79 50.6
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.6e-08 65.5 43 67.4
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.8e-07 62.0 73 43.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.0e-07 61.2 55 54.5
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 4.0e-07 60.8 55 54.5
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.2e-06 59.3 112 32.1
TWI34G1186 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.0e-06 58.5 41 63.4
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 5.7e-06 57.0 42 66.7
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 9.8e-06 56.2 40 57.5


User provided reference genes

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