Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139651 Rosa chinensis HOM05D001338 ORTHO05D001239 6.1e-52 207.2 105 100.0
RcHm_v2.0_Chr4g0435271 Rosa chinensis HOM05D001338 ORTHO05D001239 8.0e-20 100.5 60 86.7
CSS0006650 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 2.2e-17 92.4 82 51.2
RcHm_v2.0_Chr1g0320361 Rosa chinensis HOM05D001338 ORTHO05D001239 2.2e-17 92.4 83 51.8
TWI18G1324 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 4.8e-17 91.3 89 44.9
TWI74G0662 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 4.8e-17 91.3 81 49.4
CSS0005716 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 6.3e-17 90.9 82 50.0
CSS0047876 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 6.3e-17 90.9 82 50.0
TWI31G1167 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 6.3e-17 90.9 89 44.9
TWI74G0957 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 6.3e-17 90.9 89 44.9
CSS0023742 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 8.3e-17 90.5 82 50.0
CANSAT01G1407 Cannabis sativa HOM05D001338 ORTHO05D001239 8.3e-17 90.5 82 52.4
CANSAT21G0346 Cannabis sativa HOM05D001338 ORTHO05D001239 8.3e-17 90.5 82 52.4
CANSAT80G1687 Cannabis sativa HOM05D001338 ORTHO05D001239 8.3e-17 90.5 82 52.4
RcHm_v2.0_Chr6g0288531 Rosa chinensis HOM05D001338 ORTHO05D001239 1.1e-16 90.1 83 50.6
FvH4_2g29241 Fragaria vesca HOM05D001338 ORTHO05D001239 1.4e-16 89.7 83 50.6
CSS0006616 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.8e-16 89.4 82 48.8
CSS0007608 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 2.4e-16 89.0 82 48.8
CSS0026998 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 2.4e-16 89.0 82 50.0
CSS0027088 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 3.1e-16 88.6 82 48.8
CANSAT11G1935 Cannabis sativa HOM05D001338 ORTHO05D001239 7.0e-16 87.4 82 51.2
CANSAT11G2147 Cannabis sativa HOM05D001338 ORTHO05D001239 7.0e-16 87.4 73 54.8
CANSAT35G0728 Cannabis sativa HOM05D001338 ORTHO05D001239 7.0e-16 87.4 82 51.2
CANSAT35G0841 Cannabis sativa HOM05D001338 ORTHO05D001239 9.1e-16 87.0 82 51.2
CANSAT54G1040 Cannabis sativa HOM05D001338 ORTHO05D001239 9.1e-16 87.0 83 49.4
CANSAT64G1081 Cannabis sativa HOM05D001338 ORTHO05D001239 9.1e-16 87.0 83 49.4
TWI31G0800 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 9.1e-16 87.0 89 43.8
Aqoxy7G02176 Aquilegia oxysepala HOM05D001338 ORTHO05D001239 1.6e-15 86.3 82 53.7
SpUn0060_0030 Schrenkiella parvula HOM05D001338 ORTHO05D001239 4.5e-15 84.7 93 45.2
CAN.G464.34 Capsicum annuum HOM05D001338 ORTHO05D001239 5.9e-15 84.3 82 50.0
Sp6g08540 Schrenkiella parvula HOM05D001338 ORTHO05D001239 5.9e-15 84.3 67 58.2
CSS0034678 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 7.7e-15 84.0 82 47.6
Oeu046624.1 Olea europaea HOM05D001338 ORTHO05D001239 7.7e-15 84.0 73 56.2
HanXRQChr11g0321041 Helianthus annuus HOM05D001338 ORTHO05D001239 1.7e-14 82.8 85 49.4
Oeu018627.1 Olea europaea HOM05D001338 ORTHO05D001239 2.2e-14 82.4 73 54.8
Oeu035174.1 Olea europaea HOM05D001338 ORTHO05D001239 2.2e-14 82.4 89 47.2
CANSAT21G1695 Cannabis sativa HOM05D001338 ORTHO05D001239 2.9e-14 82.0 68 54.4
CANSAT46G0003 Cannabis sativa HOM05D001338 ORTHO05D001239 6.5e-14 80.9 82 47.6
FvH4_2g32571 Fragaria vesca HOM05D001338 ORTHO05D001239 1.1e-13 80.1 82 48.8
FvH4_7g07902 Fragaria vesca HOM05D001338 ORTHO05D001239 1.1e-13 80.1 82 51.2
Oeu006251.1 Olea europaea HOM05D001338 ORTHO05D001239 1.1e-13 80.1 70 54.3
CANSAT21G1775 Cannabis sativa HOM05D001338 ORTHO05D001239 1.5e-13 79.7 83 45.8
CSS0029771 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.9e-13 79.3 82 45.1
CSS0004687 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 3.2e-13 78.6 82 42.7
CSS0012104 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 4.2e-13 78.2 73 46.6
Thhalv10009558m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 4.2e-13 78.2 70 50.0
Thhalv10009736m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 4.2e-13 78.2 70 50.0
CSS0016533 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 5.5e-13 77.8 79 45.6
FvH4_6g47641 Fragaria vesca HOM05D001338 ORTHO05D001239 7.2e-13 77.4 71 56.3
AT3G29794 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 9.5e-13 77.0 77 49.4
AUR62037832 Chenopodium quinoa HOM05D001338 ORTHO05D001239 9.5e-13 77.0 82 43.9
AUR62026124 Chenopodium quinoa HOM05D001338 ORTHO05D001239 1.2e-12 76.6 80 47.5
FvH4_4g14421 Fragaria vesca HOM05D001338 ORTHO05D001239 2.1e-12 75.9 63 58.7
PSO063G6584 Papaver somniferum HOM05D001338 ORTHO05D001239 2.1e-12 75.9 76 52.6
PSO144G0154 Papaver somniferum HOM05D001338 ORTHO05D001239 2.1e-12 75.9 89 48.3
AT4G10200 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 4.7e-12 74.7 77 46.8
PSO339G5336 Papaver somniferum HOM05D001338 ORTHO05D001239 4.7e-12 74.7 76 51.3
PSO675G4854 Papaver somniferum HOM05D001338 ORTHO05D001239 4.7e-12 74.7 79 40.5
PSO781G0133 Papaver somniferum HOM05D001338 ORTHO05D001239 6.1e-12 74.3 76 51.3
PSO063G6488 Papaver somniferum HOM05D001338 ORTHO05D001239 8.0e-12 73.9 76 51.3
PSO478G1760 Papaver somniferum HOM05D001338 ORTHO05D001239 8.0e-12 73.9 76 51.3
PSO832G0537 Papaver somniferum HOM05D001338 ORTHO05D001239 8.0e-12 73.9 76 51.3
CSS0025100 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.0e-11 73.6 70 45.7
FvH4_1g08761 Fragaria vesca HOM05D001338 ORTHO05D001239 1.0e-11 73.6 90 45.6
PSO764G0071 Papaver somniferum HOM05D001338 ORTHO05D001239 1.0e-11 73.6 76 51.3
CANSAT01G0302 Cannabis sativa HOM05D001338 ORTHO05D001239 1.4e-11 73.2 82 42.7
RcHm_v2.0_Chr7g0198811 Rosa chinensis HOM05D001338 ORTHO05D001239 2.3e-11 72.4 73 46.6
ECA232G4407 Erigeron canadensis HOM05D001338 ORTHO05D001239 3.0e-11 72.0 85 44.7
Thhalv10016048m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 3.0e-11 72.0 67 49.3
PSO724G0816 Papaver somniferum HOM05D001338 ORTHO05D001239 4.0e-11 71.6 76 50.0
Sp3g27040 Schrenkiella parvula HOM05D001338 ORTHO05D001239 4.0e-11 71.6 64 48.4
Atru.chr1.2432 Acer truncatum HOM05D001338 ORTHO05D001239 5.2e-11 71.2 71 49.3
PSO210G1253 Papaver somniferum HOM05D001338 ORTHO05D001239 8.8e-11 70.5 76 48.7
PSO761G0174 Papaver somniferum HOM05D001338 ORTHO05D001239 8.8e-11 70.5 71 47.9
PSO063G7197 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-10 70.1 76 50.0
Oeu029248.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-10 69.7 86 40.7
FvH4_1g10851 Fragaria vesca HOM05D001338 ORTHO05D001239 2.6e-10 68.9 71 46.5
Oeu023192.1 Olea europaea HOM05D001338 ORTHO05D001239 3.4e-10 68.6 82 40.2
FvH4_2g18762 Fragaria vesca HOM05D001338 ORTHO05D001239 4.4e-10 68.2 77 42.9
CANSAT01G0451 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-10 67.8 58 55.2
PSO478G3958 Papaver somniferum HOM05D001338 ORTHO05D001239 5.7e-10 67.8 82 42.7
TWI73G0975 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 5.7e-10 67.8 83 43.4
HanXRQChr10g0286761 Helianthus annuus HOM05D001338 ORTHO05D001239 9.8e-10 67.0 82 48.8
BcaB06g28244 Brassica carinata HOM05D001338 ORTHO05D001239 1.3e-09 66.6 70 45.7
CANSAT80G1592 Cannabis sativa HOM05D001338 ORTHO05D001239 1.3e-09 66.6 58 55.2
PSO017G2034 Papaver somniferum HOM05D001338 ORTHO05D001239 1.7e-09 66.2 67 38.8
PSO339G3227 Papaver somniferum HOM05D001338 ORTHO05D001239 1.7e-09 66.2 83 38.6
CARHR289900 Cardamine hirsuta HOM05D001338 ORTHO05D001239 2.2e-09 65.9 71 46.5
PSO675G6439 Papaver somniferum HOM05D001338 ORTHO05D001239 2.2e-09 65.9 81 45.7
Zm00001eb419880 Zea mays HOM05D001338 ORTHO05D001239 2.2e-09 65.9 70 48.6
AT2G16040 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 2.8e-09 65.5 70 41.4
CARHR149350 Cardamine hirsuta HOM05D001338 ORTHO05D001239 2.8e-09 65.5 70 47.1
Glyma.14G186200 Glycine max HOM05D001338 ORTHO05D001239 2.8e-09 65.5 79 41.8
PSO017G0847 Papaver somniferum HOM05D001338 ORTHO05D001239 2.8e-09 65.5 81 45.7
Oeu034167.1 Olea europaea HOM05D001338 ORTHO05D001239 4.9e-09 64.7 82 42.7
PSO724G1235 Papaver somniferum HOM05D001338 ORTHO05D001239 4.9e-09 64.7 81 45.7
Zm00001eb395890 Zea mays HOM05D001338 ORTHO05D001239 4.9e-09 64.7 91 35.2
Oeu011870.1 Olea europaea HOM05D001338 ORTHO05D001239 6.3e-09 64.3 82 41.5
Thhalv10017956m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 8.3e-09 63.9 77 45.5
PSO063G4296 Papaver somniferum HOM05D001338 ORTHO05D001239 8.3e-09 63.9 71 42.3
PSO384G1406 Papaver somniferum HOM05D001338 ORTHO05D001239 8.3e-09 63.9 79 38.0
Thhalv10001096m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 2.4e-08 62.4 58 51.7
RcHm_v2.0_Chr7g0233981 Rosa chinensis HOM05D001338 ORTHO05D001239 2.4e-08 62.4 61 47.5
MD01G1087700 Malus domestica HOM05D001113 ORTHO05D000968 3.1e-08 62.0 60 46.7
PSO138G0008 Papaver somniferum HOM05D001338 ORTHO05D001239 3.1e-08 62.0 81 40.7
PSO138G0009 Papaver somniferum HOM05D001338 ORTHO05D001239 3.1e-08 62.0 81 40.7
Oeu017832.1 Olea europaea HOM05D001338 ORTHO05D001239 4.1e-08 61.6 82 39.0
PSO782G2771 Papaver somniferum HOM05D001338 ORTHO05D001239 4.1e-08 61.6 67 35.8
Aqoxy3G01368 Aquilegia oxysepala HOM05D001338 ORTHO05D026727 5.4e-08 61.2 60 51.7
Oeu011673.1 Olea europaea HOM05D001338 ORTHO05D001239 5.4e-08 61.2 74 43.2
RcHm_v2.0_Chr6g0250061 Rosa chinensis HOM05D001338 ORTHO05D001239 5.4e-08 61.2 61 45.9
Oeu063768.1 Olea europaea HOM05D001338 ORTHO05D001239 7.0e-08 60.8 82 40.2
PSO384G2524 Papaver somniferum HOM05D001338 ORTHO05D001239 7.0e-08 60.8 79 36.7
Oeu034372.1 Olea europaea HOM05D001338 ORTHO05D001239 9.2e-08 60.5 82 41.5
Sp6g14340 Schrenkiella parvula HOM05D001338 ORTHO05D001239 9.2e-08 60.5 60 43.3
Oeu033602.1 Olea europaea HOM05D001338 ORTHO05D001239 2.0e-07 59.3 74 40.5
PSO063G6596 Papaver somniferum HOM05D001338 ORTHO05D001239 2.0e-07 59.3 83 36.1
Oeu019018.1 Olea europaea HOM05D001338 ORTHO05D001239 3.5e-07 58.5 82 40.2
Oeu029413.1 Olea europaea HOM05D001338 ORTHO05D001239 3.5e-07 58.5 70 41.4
PSO135G0743 Papaver somniferum HOM05D001338 ORTHO05D001239 4.5e-07 58.2 81 34.6
PSO210G1168 Papaver somniferum HOM05D001338 ORTHO05D001239 4.5e-07 58.2 81 34.6
PSO339G3643 Papaver somniferum HOM05D001338 ORTHO05D001239 4.5e-07 58.2 81 34.6
CANSAT56G4418 Cannabis sativa HOM05D001338 ORTHO05D001239 5.9e-07 57.8 65 41.5
CANSAT54G1041 Cannabis sativa HOM05D001338 ORTHO05D001239 7.7e-07 57.4 46 58.7
Oeu025048.1 Olea europaea HOM05D001338 ORTHO05D001239 1.0e-06 57.0 82 37.8
PSO541G5408 Papaver somniferum HOM05D001338 ORTHO05D001239 1.0e-06 57.0 69 39.1
FvH4_4g14431 Fragaria vesca HOM05D001338 ORTHO05D026727 1.7e-06 56.2 60 46.7
PSO063G5018 Papaver somniferum HOM05D001338 ORTHO05D001239 1.7e-06 56.2 68 36.8
PSO541G0488 Papaver somniferum HOM05D001338 ORTHO05D001239 3.8e-06 55.1 81 33.3
PSO170G3017 Papaver somniferum HOM05D001338 ORTHO05D001239 6.6e-06 54.3 81 32.1


User provided reference genes

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