Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139631 Rosa chinensis HOM05D007180 ORTHO05D009028 5.8e-200 700.7 349 100.0
FAN14G2528 Fragaria x ananassa HOM05D007180 ORTHO05D009028 1.3e-191 672.9 349 94.8
FAN02G1418 Fragaria x ananassa HOM05D007180 ORTHO05D009028 2.3e-188 662.1 349 93.4
FvH4_6g32020 Fragaria vesca HOM05D007180 ORTHO05D009028 1.1e-185 653.3 338 94.7
Prupe.3G062900 Prunus persica HOM05D007180 ORTHO05D009028 3.2e-182 641.7 347 91.6
MD09G1206800 Malus domestica HOM05D007180 ORTHO05D009028 5.3e-177 624.4 347 89.3
MD17G1187500 Malus domestica HOM05D007180 ORTHO05D009028 4.2e-174 614.8 347 88.2
Ciclev10026017m.g Citrus clementina HOM05D007180 ORTHO05D009028 2.6e-160 568.9 326 84.0
Atru.chr1.3471 Acer truncatum HOM05D007180 ORTHO05D009028 1.6e-157 559.7 337 81.9
GSVIVG01017035001 Vitis vinifera HOM05D007180 ORTHO05D009028 5.7e-155 551.2 328 81.7
CiPaw.02G147300 Carya illinoinensis HOM05D007180 ORTHO05D009028 2.2e-154 549.3 331 81.0
QL05p020883 Quercus lobata HOM05D007180 ORTHO05D009028 1.3e-151 540.0 319 83.1
Duzib235G1436 Durio zibethinus HOM05D007180 ORTHO05D009028 3.8e-151 538.5 328 80.8
Cfa002118 Carpinus fangiana HOM05D007180 ORTHO05D009028 5.0e-151 538.1 335 77.9
PGR102G1587 Punica granatum HOM05D007180 ORTHO05D009028 1.1e-150 537.0 328 78.7
Gorai.003G063600 Gossypium raimondii HOM05D007180 ORTHO05D009028 1.9e-150 536.2 333 80.2
CANSAT56G0293 Cannabis sativa HOM05D007180 ORTHO05D009028 9.4e-150 533.9 326 81.9
Gohir.A02G119000 Gossypium hirsutum HOM05D007180 ORTHO05D009028 9.4e-150 533.9 333 79.3
Thecc.06G096400 Theobroma cacao HOM05D007180 ORTHO05D009028 1.2e-149 533.5 328 80.8
TAR383G0610 Trochodendron aralioides HOM05D007180 ORTHO05D009028 2.7e-149 532.3 321 80.1
Gohir.D03G059800 Gossypium hirsutum HOM05D007180 ORTHO05D009028 7.9e-149 530.8 333 79.6
Haze_16331 Corylus avellana HOM05D007180 ORTHO05D009028 1.8e-148 529.6 350 74.9
Eucgr.F03061 Eucalyptus grandis HOM05D007180 ORTHO05D009028 1.5e-147 526.6 334 76.0
Glyma.08G202600 Glycine max HOM05D007180 ORTHO05D009028 4.4e-147 525.0 322 79.2
TPR.G35011 Trifolium pratense HOM05D007180 ORTHO05D009028 5.7e-147 524.6 315 81.0
Glyma.07G017400 Glycine max HOM05D007180 ORTHO05D009028 2.8e-146 522.3 322 78.9
Lj3g0006974 Lotus japonicus HOM05D007180 ORTHO05D009028 2.4e-145 519.2 324 78.1
Nn3g18173 Nelumbo nucifera HOM05D007180 ORTHO05D009028 2.4e-145 519.2 334 76.3
Carub.0001s4110 Capsella rubella HOM05D007180 ORTHO05D009028 5.3e-145 518.1 311 80.4
THA.LOC104817969 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 9.1e-145 517.3 315 80.6
AT1G52155 Arabidopsis thaliana HOM05D007180 ORTHO05D009028 1.2e-144 516.9 311 80.4
Lalb_Chr04g0262871 Lupinus albus HOM05D007180 ORTHO05D009028 1.6e-144 516.5 315 78.7
Sp1g38710 Schrenkiella parvula HOM05D007180 ORTHO05D009028 1.6e-144 516.5 311 79.7
AL1G60250 Arabidopsis lyrata HOM05D007180 ORTHO05D009028 2.0e-144 516.2 311 80.4
Medtr8g013830 Medicago truncatula HOM05D007180 ORTHO05D009028 2.0e-144 516.2 314 79.6
Thhalv10011664m.g Eutrema salsugineum HOM05D007180 ORTHO05D009028 2.6e-144 515.8 311 79.7
Hma1.2p1_1689F.1_g297640 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 2.6e-144 515.8 313 81.2
Psat4g197600 Pisum sativum HOM05D007180 ORTHO05D009028 2.9e-143 512.3 323 77.4
A06p02010 Brassica napus HOM05D007180 ORTHO05D009028 5.0e-143 511.5 312 79.8
BraA06t23417Z Brassica rapa HOM05D007180 ORTHO05D009028 5.0e-143 511.5 312 79.8
CARHR042290 Cardamine hirsuta HOM05D007180 ORTHO05D009028 5.0e-143 511.5 311 79.4
BolC6t35829H Brassica oleracea HOM05D007180 ORTHO05D009028 6.5e-143 511.1 312 79.8
THA.LOC104810533 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 1.1e-142 510.4 313 79.9
Phvul.010G146700 Phaseolus vulgaris HOM05D007180 ORTHO05D009028 3.2e-142 508.8 324 75.6
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 9.4e-142 507.3 315 79.0
Actinidia39147 Actinidia chinensis HOM05D007180 ORTHO05D009028 6.1e-141 504.6 327 74.6
Actinidia09001 Actinidia chinensis HOM05D007180 ORTHO05D009028 1.0e-140 503.8 338 72.5
Aqoxy7G03907 Aquilegia oxysepala HOM05D007180 ORTHO05D009028 1.0e-140 503.8 324 74.4
ClCG09G001780 Citrullus lanatus HOM05D007180 ORTHO05D009028 2.0e-139 499.6 331 74.6
Sed0016027 Sechium edule HOM05D007180 ORTHO05D009028 2.0e-139 499.6 313 76.7
Aa31LG10G2730 Aethionema arabicum HOM05D007180 ORTHO05D009028 2.6e-139 499.2 314 76.4
CsaV3_7G033560 Cucumis sativus L. HOM05D007180 ORTHO05D009028 4.4e-139 498.4 326 74.8
C06p07400 Brassica napus HOM05D007180 ORTHO05D009028 1.3e-138 496.9 338 73.7
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.3e-138 496.9 324 75.0
Potri.001G187300 Populus trichocarpa HOM05D007180 ORTHO05D009028 6.3e-138 494.6 324 75.0
PSO210G4764 Papaver somniferum HOM05D007180 ORTHO05D009028 1.2e-136 490.3 325 70.5
Rhsim12G0201900 Rhododendron simsii HOM05D007180 ORTHO05D009028 1.6e-136 490.0 336 72.9
PSO210G1533 Papaver somniferum HOM05D007180 ORTHO05D009028 5.9e-136 488.0 316 71.8
arahy.Tifrunner.gnm1.ann1.BL3LB4 Arachis hypogaea HOM05D007180 ORTHO05D009028 2.9e-135 485.7 333 72.7
Cc04_g02770 Coffea canephora HOM05D007180 ORTHO05D009028 1.5e-134 483.4 325 71.7
TAR626G1393 Trochodendron aralioides HOM05D007180 ORTHO05D009028 2.1e-133 479.6 328 72.9
Dinv30459 Davidia involucrata HOM05D007180 ORTHO05D009028 2.7e-133 479.2 282 83.7
TWI75G1824 Tripterygium wilfordii HOM05D007180 ORTHO05D009028 1.4e-132 476.9 326 72.4
MELO3C024267.2 Cucumis melo HOM05D007180 ORTHO05D009028 8.8e-132 474.2 302 76.8
Oeu060509.1 Olea europaea HOM05D007180 ORTHO05D009028 1.2e-131 473.8 323 72.1
Solyc03g120830.3 Solanum lycopersicum HOM05D007180 ORTHO05D009028 6.3e-130 468.0 316 71.2
Sopen03g039650 Solanum pennellii HOM05D007180 ORTHO05D009028 2.4e-129 466.1 316 70.9
AUR62031877 Chenopodium quinoa HOM05D007180 ORTHO05D009028 3.1e-129 465.7 311 71.1
Nitab4.5_0001315g0310 Nicotiana tabacum HOM05D007180 ORTHO05D009028 7.0e-129 464.5 314 72.0
Nitab4.5_0007758g0080 Nicotiana tabacum HOM05D007180 ORTHO05D009028 2.0e-128 463.0 314 71.3
PGSC0003DMG401002538 Solanum tuberosum HOM05D007180 ORTHO05D009028 8.5e-127 457.6 316 69.6
AUR62022171 Chenopodium quinoa HOM05D007180 ORTHO05D009028 1.6e-125 453.4 340 65.3
BcaC08g43372 Brassica carinata HOM05D007180 ORTHO05D009028 2.8e-125 452.6 279 79.2
SalBow2G0157 Salvia bowleyana HOM05D007180 ORTHO05D009028 2.3e-124 449.5 322 65.8
EL10Ac9g22108 Beta vulgaris HOM05D007180 ORTHO05D009028 1.2e-123 447.2 312 69.9
Sc10g0007260 Simmondsia chinensis HOM05D007180 ORTHO05D009028 1.5e-123 446.8 299 72.9
Lj5A56T50 Lonicera japonica HOM05D007180 ORTHO05D009028 2.0e-123 446.4 279 80.3
CAN.G438.9 Capsicum annuum HOM05D007180 ORTHO05D009028 5.7e-123 444.9 316 67.7
Peaxi162Scf00038g00837 Petunia axillaris HOM05D007180 ORTHO05D009028 1.7e-122 443.4 316 68.4
Manes.11G035900 Manihot esculenta HOM05D007180 ORTHO05D009028 2.4e-121 439.5 323 66.3
Migut.I00923 Erythranthe guttata HOM05D007180 ORTHO05D009028 5.9e-120 434.9 313 66.1
HanXRQChr09g0275941 Helianthus annuus HOM05D007180 ORTHO05D009028 1.0e-119 434.1 312 66.3
Lsat_1_v5_gn_4_100560 Lactuca sativa HOM05D007180 ORTHO05D009028 1.9e-118 429.9 312 66.0
CSS0022642 Camellia sinensis var. sinensis HOM05D007180 ORTHO05D009028 2.5e-110 402.9 240 80.4
Hma1.2p1_1689F.1_g297650 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 1.6e-109 400.2 236 83.5
vmacro16982 Vaccinium macrocarpon HOM05D007180 ORTHO05D009028 1.6e-109 400.2 315 63.8
arahy.Tifrunner.gnm1.ann1.Z8Y5NA Arachis hypogaea HOM05D007180 ORTHO05D009028 4.7e-109 398.7 320 64.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 8.0e-109 397.9 251 77.7
Hund06649 Selenicereus undatus HOM05D007180 ORTHO05D009028 2.2e-106 389.8 326 61.7
Os11g0466300 Oryza sativa ssp. japonica HOM05D007180 ORTHO05D009028 1.1e-105 387.5 306 58.5
Zm00001eb156840 Zea mays HOM05D007180 ORTHO05D009028 8.9e-100 367.9 286 60.1
AagrBONN_evm.TU.Sc2ySwM_344.297 Anthoceros agrestis HOM05D007180 ORTHO05D009028 2.1e-93 346.7 323 52.6
SEGI_07196 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 1.4e-92 344.0 312 52.2
SEGI_18381 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 1.4e-92 344.0 312 52.2
Mapoly0061s0142 Marchantia polymorpha HOM05D007180 ORTHO05D009028 5.2e-92 342.0 308 53.2
SGA_v2.0_scaffold5G02533 Striga asiatica HOM05D007180 ORTHO05D009028 7.6e-91 338.2 319 55.2
Pp3c4_2280 Physcomitrium patens HOM05D007180 ORTHO05D009028 4.6e-88 328.9 308 50.3
Pp3c3_33050 Physcomitrium patens HOM05D007180 ORTHO05D009028 1.7e-87 327.0 308 50.6
ATR0705G160 Amborella trichopoda HOM05D007180 ORTHO05D009028 1.5e-86 323.9 259 61.0
Pp3c27_6190 Physcomitrium patens HOM05D007180 ORTHO05D009028 2.8e-85 319.7 308 50.0
ECA232G5021 Erigeron canadensis HOM05D000415 ORTHO05D001916 6.2e-85 318.5 233 67.8
Pp3c10_19810 Physcomitrium patens HOM05D007180 ORTHO05D009028 6.2e-85 318.5 308 50.6
Pp3c12_14730 Physcomitrium patens HOM05D007180 ORTHO05D009028 2.6e-83 313.2 307 49.8
Pp3c5_1000 Physcomitrium patens HOM05D007180 ORTHO05D009028 7.6e-83 311.6 308 48.7
DCAR_016200 Daucus carota HOM05D007180 ORTHO05D009028 1.2e-80 304.3 325 49.8
Cpa.g.sc109.35 Carica papaya HOM05D007180 ORTHO05D009028 3.8e-74 282.7 308 51.6
unitig_748.g7435 Utricularia gibba HOM05D007180 ORTHO05D009028 2.4e-73 280.0 329 44.1
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.3e-69 267.7 290 52.4
SMO364G0215 Selaginella moellendorffii HOM05D007180 ORTHO05D009028 9.6e-62 241.5 213 55.4
FAN09G3228 Fragaria x ananassa HOM05D007180 ORTHO05D009028 7.2e-49 198.7 132 78.0
MBI04_g27060_MAGBIO Magnolia biondii HOM05D007180 ORTHO05D009028 1.1e-30 138.3 107 61.7
vmacro02767 Vaccinium macrocarpon HOM05D063291 ORTHO05D009028 2.3e-07 60.8 39 69.2


User provided reference genes

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