Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 8.1e-180 633.6 324 100.0
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.3e-177 626.3 324 98.8
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-170 603.2 322 94.7
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.0e-170 602.4 322 94.1
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.6e-170 602.1 322 93.8
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.9e-169 597.8 322 93.5
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.2e-168 594.7 322 92.9
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 5.6e-157 557.8 321 86.0
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 7.6e-154 547.4 320 84.4
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 7.6e-154 547.4 320 84.4
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.1e-152 543.5 321 84.4
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.4e-152 543.1 320 84.4
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.5e-152 542.3 320 83.1
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 6.0e-151 537.7 320 82.2
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.3e-148 530.0 320 80.6
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 6.2e-148 527.7 319 82.1
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.1e-147 526.9 313 81.2
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.1e-147 526.9 318 81.1
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.8e-147 526.2 313 83.1
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 6.9e-147 524.2 316 81.6
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 5.8e-146 521.2 316 81.3
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 8.4e-145 517.3 317 79.2
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 8.4e-145 517.3 321 77.9
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.9e-144 516.2 318 78.6
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 5.5e-144 514.6 320 79.4
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 7.9e-143 510.8 319 78.1
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.0e-142 510.4 318 78.9
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.3e-142 510.0 316 79.7
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.3e-142 510.0 318 77.7
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.5e-141 506.5 319 77.7
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.5e-141 506.5 318 78.0
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 7.4e-141 504.2 321 77.3
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 7.4e-141 504.2 317 77.6
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.4e-141 504.2 317 77.0
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 4.8e-140 501.5 318 77.7
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.3e-140 501.1 319 76.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 6.3e-140 501.1 317 76.7
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.2e-140 500.7 319 76.5
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-139 500.4 319 76.8
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.4e-139 499.2 319 76.8
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.4e-139 499.2 321 76.9
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 6.9e-139 497.7 322 77.0
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 9.0e-139 497.3 298 82.6
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.5e-138 496.5 324 76.2
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 1.5e-138 496.5 316 77.8
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 2.6e-138 495.7 317 76.3
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.6e-138 495.7 319 78.1
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 3.4e-138 495.4 317 75.7
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 4.5e-138 495.0 322 77.0
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.5e-138 495.0 318 75.8
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 5.9e-138 494.6 317 75.7
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.9e-138 494.6 317 77.0
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.3e-137 493.4 317 75.7
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 3.8e-137 491.9 320 73.4
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 5.0e-137 491.5 320 74.4
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 6.5e-137 491.1 318 77.0
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 6.5e-137 491.1 319 76.8
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 8.5e-137 490.7 320 75.6
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.1e-136 490.3 319 75.2
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.4e-136 490.0 318 75.2
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.9e-136 489.6 321 74.8
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 2.5e-136 489.2 316 75.9
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.5e-136 489.2 319 75.9
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.2e-135 486.9 319 74.0
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.2e-135 486.9 317 73.5
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.6e-135 486.5 318 74.8
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 2.1e-135 486.1 312 75.6
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 2.7e-135 485.7 313 73.8
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 2.7e-135 485.7 315 73.7
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.6e-135 485.3 315 74.9
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 6.1e-135 484.6 317 75.7
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 6.1e-135 484.6 319 73.4
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.0e-134 483.8 315 77.5
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.4e-134 483.4 320 74.7
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.8e-134 483.0 320 73.4
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 2.3e-134 482.6 318 74.5
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 5.1e-134 481.5 320 72.5
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.5e-133 479.9 319 73.0
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 3.3e-133 478.8 316 73.7
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.3e-133 478.4 320 72.5
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.3e-133 478.4 319 73.0
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.3e-133 478.4 313 75.1
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 7.4e-133 477.6 312 73.4
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 9.7e-133 477.2 312 74.4
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.8e-132 475.7 320 72.5
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 2.8e-132 475.7 318 72.3
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.8e-132 475.7 320 71.2
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.1e-131 471.9 318 72.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.9e-131 471.1 295 79.7
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 9.1e-131 470.7 318 70.4
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 9.1e-131 470.7 318 70.8
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.5e-130 469.9 296 78.7
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.0e-130 469.5 320 69.7
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 5.9e-130 468.0 313 71.2
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.4e-128 463.4 318 70.1
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.4e-128 463.4 318 70.1
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.4e-128 463.4 318 70.1
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-128 463.0 287 78.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 2.1e-127 459.5 318 69.5
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 7.9e-127 457.6 319 71.8
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.4e-126 456.8 318 71.4
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.8e-126 456.4 320 69.1
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.3e-126 456.1 318 71.1
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.3e-124 450.3 319 69.0
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.4e-123 446.8 293 74.7
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 4.5e-122 441.8 317 65.6
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 1.0e-121 440.7 319 65.5
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 1.3e-121 440.3 322 69.9
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 3.2e-120 435.6 314 70.4
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.6e-119 432.2 320 65.6
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.8e-118 429.9 316 69.3
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.5e-117 426.8 315 66.0
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.3e-116 423.7 304 68.4
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.3e-116 423.7 318 62.6
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 6.3e-116 421.4 321 65.1
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.2e-112 409.1 312 66.3
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 4.4e-101 372.1 321 56.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 4.8e-100 368.6 228 77.6
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.4e-94 350.5 313 55.6
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 4.0e-94 349.0 301 56.1
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.5e-90 335.9 266 61.7
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 8.0e-87 324.7 309 56.6
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.9e-80 303.5 305 47.9
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.1e-75 287.7 320 47.5
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 6.6e-65 251.9 349 42.7
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.0e-61 240.4 348 40.2
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.5e-56 224.2 271 47.2
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.1e-54 218.0 326 38.3
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.4e-46 190.3 309 41.1
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.3e-44 184.5 124 70.2
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.9e-44 183.3 117 74.4
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.3e-39 167.9 108 78.7
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 4.2e-35 152.9 129 59.7
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.9e-32 144.1 237 40.1
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 5.7e-32 142.5 117 59.0
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 8.2e-31 138.7 87 73.6
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 2.4e-22 110.5 68 85.3
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.9e-19 100.9 69 66.7
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.2e-15 87.4 54 72.2


User provided reference genes

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