Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 9.7e-291 1002.7 474 100.0
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 3.5e-256 887.9 443 93.9
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.1e-254 882.9 443 93.0
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.7e-248 861.7 459 89.3
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 2.5e-238 828.6 463 83.8
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 6.8e-236 820.5 453 85.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 5.4e-233 810.8 450 84.2
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 6.8e-228 793.9 445 82.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.9e-214 749.2 441 79.1
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.3e-214 748.4 447 79.2
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 4.8e-213 744.6 441 80.3
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 6.2e-213 744.2 457 77.5
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.4e-212 743.0 432 80.6
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.4e-211 738.4 443 78.8
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 7.6e-211 737.3 456 77.2
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 9.9e-211 736.9 450 77.6
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 7.1e-209 730.7 452 77.4
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.7e-208 728.8 434 78.3
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 7.9e-208 727.2 447 78.5
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.0e-207 726.9 442 78.3
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.3e-207 726.5 455 76.5
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.3e-207 726.5 436 78.0
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.8e-207 726.1 448 76.3
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.3e-207 725.7 436 79.6
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 3.0e-207 725.3 430 77.9
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 3.9e-207 724.9 441 77.1
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 3.9e-207 724.9 448 77.5
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 8.7e-207 723.8 433 76.9
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.1e-206 723.4 434 77.9
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.1e-206 723.4 434 77.2
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.1e-206 723.4 438 78.1
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.9e-206 722.6 434 78.6
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.9e-206 722.6 447 77.9
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.5e-206 722.2 443 78.6
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.3e-206 721.8 457 75.5
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.3e-206 721.5 453 76.8
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 5.6e-206 721.1 429 76.9
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 5.6e-206 721.1 452 75.4
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 7.4e-206 720.7 446 77.4
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.1e-205 719.2 451 75.8
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.8e-205 718.8 454 76.0
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.8e-205 718.8 444 77.9
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.6e-205 718.4 434 76.5
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.8e-205 718.0 451 75.8
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 6.2e-205 717.6 461 74.8
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 6.2e-205 717.6 445 75.3
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 6.2e-205 717.6 446 76.7
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.1e-205 717.2 457 75.9
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.4e-204 716.5 445 75.1
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.8e-204 716.1 457 75.3
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.4e-204 715.7 443 75.2
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 4.0e-204 714.9 442 75.3
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.0e-204 714.9 434 76.3
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.0e-204 714.9 434 76.0
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 6.9e-204 714.1 432 75.2
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 9.0e-204 713.8 434 75.8
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.5e-203 713.0 443 74.7
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.6e-203 712.2 434 76.5
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.6e-203 712.2 434 75.8
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 4.5e-203 711.4 445 74.6
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.5e-203 711.4 434 75.8
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 5.8e-203 711.1 436 75.7
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 5.8e-203 711.1 436 77.5
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 9.9e-203 710.3 440 75.2
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.3e-202 709.9 437 77.1
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.3e-202 709.9 445 75.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 1.7e-202 709.5 438 76.5
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.9e-202 708.0 441 75.1
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 6.4e-202 707.6 436 75.7
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 6.4e-202 707.6 493 71.0
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.1e-201 706.8 431 76.8
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.1e-201 706.8 445 75.3
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.1e-201 706.8 431 77.7
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.4e-201 706.4 432 77.5
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 1.9e-201 706.1 443 74.7
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.4e-201 705.7 448 74.3
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 3.2e-201 705.3 458 74.0
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 3.2e-201 705.3 439 76.8
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.2e-201 704.9 475 73.1
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 2.7e-200 702.2 364 85.4
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.7e-200 702.2 452 73.0
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.7e-200 702.2 448 73.9
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.7e-200 702.2 448 73.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 6.0e-200 701.0 364 85.4
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 7.9e-200 700.7 441 74.8
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 7.9e-200 700.7 441 76.4
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 2.3e-199 699.1 453 72.6
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.3e-199 699.1 434 74.7
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 6.7e-199 697.6 453 72.4
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 8.7e-199 697.2 452 72.6
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.5e-198 696.4 453 72.6
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 7.4e-198 694.1 393 80.2
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 9.6e-198 693.7 453 72.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 9.6e-198 693.7 437 73.9
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 9.6e-198 693.7 435 74.3
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.3e-197 693.3 443 73.8
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 4.8e-197 691.4 443 72.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.4e-196 689.9 435 73.1
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 3.1e-196 688.7 407 77.4
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 6.9e-196 687.6 440 75.0
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 8.4e-194 680.6 427 75.6
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 7.1e-193 677.6 510 64.9
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 2.7e-192 675.6 439 72.7
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 2.3e-191 672.5 433 73.2
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 3.0e-191 672.2 441 72.6
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 5.7e-190 667.9 431 73.3
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 4.8e-189 664.8 443 72.2
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 2.4e-188 662.5 432 74.8
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.1e-188 662.1 440 71.6
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.9e-186 655.6 428 72.2
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.9e-184 647.5 385 76.6
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.0e-183 647.1 425 72.9
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 2.5e-182 642.5 444 70.3
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 7.4e-182 641.0 413 70.5
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.8e-180 636.3 445 69.0
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.6e-176 621.7 454 66.5
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 8.8e-175 617.5 322 87.3
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.7e-173 612.1 289 96.9
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.2e-171 607.1 344 81.1
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 4.5e-171 605.1 424 68.4
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.1e-169 600.5 324 84.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.2e-163 580.5 385 67.0
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.1e-160 569.7 290 89.3
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 2.3e-159 566.2 409 66.0
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 6.7e-159 564.7 291 88.0
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 3.5e-155 552.4 340 78.2
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.6e-150 536.2 287 82.2
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.2e-145 519.2 392 67.6
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 5.2e-143 511.9 266 88.0
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.4e-140 501.9 334 65.3
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.2e-134 484.2 305 77.7
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.5e-129 467.2 314 71.3
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.5e-129 467.2 297 73.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 3.1e-127 459.5 374 56.7
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 5.6e-121 438.7 285 69.1
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.7e-106 390.6 342 50.3
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.1e-99 367.1 269 68.0
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.8e-94 349.0 318 51.3
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.6e-88 330.9 332 46.1
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.5e-70 269.6 138 87.7
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.7e-64 250.0 179 65.4
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.1e-55 221.9 109 89.9
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 3.2e-52 210.3 124 75.0
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.6e-51 208.0 119 77.3
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 6.7e-50 202.6 138 65.2
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 2.1e-43 181.0 127 65.4
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.2e-32 144.4 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.3e-32 142.9 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 5.9e-30 136.3 80 75.0
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.8e-26 124.8 101 61.4
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 1.9e-15 88.2 128 45.3
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 4.6e-14 83.6 113 44.2
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 5.6e-12 76.6 52 65.4
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 9.2e-07 59.3 30 76.7


User provided reference genes

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