Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 6.5e-108 394.0 196 100.0
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.2e-100 369.0 196 91.8
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 4.2e-99 364.8 196 91.8
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 7.2e-99 364.0 196 90.3
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.8e-95 352.1 190 92.1
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.9e-93 344.4 195 85.1
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 2.5e-91 339.0 192 84.4
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.1e-86 321.6 176 90.9
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 5.9e-85 317.8 196 79.1
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.3e-84 316.6 196 77.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.3e-84 316.6 192 79.2
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.7e-84 316.2 196 77.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.3e-84 315.8 192 77.6
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 2.3e-84 315.8 196 79.1
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.3e-84 315.8 192 78.1
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 3.8e-84 315.1 197 76.6
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 6.6e-84 314.3 196 78.1
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.9e-83 312.8 196 76.0
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.6e-83 311.2 191 78.5
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 5.6e-83 311.2 196 77.0
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 7.3e-83 310.8 192 77.6
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.1e-82 309.3 192 77.1
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.1e-82 309.3 196 77.0
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 4.7e-82 308.1 192 77.6
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.0e-81 305.4 196 74.5
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 6.8e-81 304.3 192 76.6
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 6.8e-81 304.3 196 74.5
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 2.0e-80 302.8 191 74.3
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 2.6e-80 302.4 196 75.5
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 2.6e-80 302.4 195 73.3
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 4.4e-80 301.6 192 73.4
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 9.8e-80 300.4 196 73.5
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.3e-79 300.1 190 73.7
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.7e-79 299.7 196 75.5
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 3.7e-79 298.5 194 73.7
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.7e-79 298.5 189 76.2
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 4.9e-79 298.1 191 75.4
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.4e-79 297.7 190 74.7
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.1e-78 297.0 184 79.3
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.1e-78 297.0 196 72.4
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 4.1e-78 295.0 191 72.8
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.1e-78 295.0 196 71.4
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 5.4e-78 294.7 190 75.8
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 9.2e-78 293.9 194 74.2
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-77 293.5 189 73.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 2.0e-77 292.7 188 76.1
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 3.5e-77 292.0 197 72.1
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.6e-77 291.6 191 73.8
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 6.0e-77 291.2 193 73.1
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.0e-76 290.4 191 71.7
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.3e-76 290.0 196 71.9
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.3e-76 289.3 189 73.5
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 3.9e-76 288.5 190 72.6
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 6.6e-76 287.7 187 73.8
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 3.3e-75 285.4 183 76.5
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 3.3e-75 285.4 193 71.5
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 4.3e-75 285.0 193 69.9
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 4.3e-75 285.0 188 75.0
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 4.3e-75 285.0 171 78.4
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 7.3e-75 284.3 193 71.0
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.2e-74 283.5 183 76.0
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.6e-74 283.1 196 70.9
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 3.6e-74 282.0 196 69.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.1e-73 280.4 192 72.4
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.1e-73 280.4 186 72.6
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.3e-73 279.3 180 75.0
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 3.1e-73 278.9 193 69.9
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 5.2e-73 278.1 185 70.8
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 8.9e-73 277.3 196 69.4
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 8.9e-73 277.3 179 73.2
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 2.0e-72 276.2 167 77.2
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 3.4e-72 275.4 194 69.6
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 5.8e-72 274.6 170 75.9
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 7.5e-72 274.2 191 70.2
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.3e-71 273.5 191 67.5
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.3e-71 273.5 179 74.9
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.7e-71 273.1 194 69.6
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.7e-71 273.1 196 68.4
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.7e-71 273.1 171 77.8
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.2e-71 272.7 191 70.7
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 8.3e-71 270.8 166 80.1
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.4e-70 270.0 188 69.1
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.9e-70 269.6 170 75.9
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 2.4e-70 269.2 202 67.3
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 3.2e-70 268.9 190 70.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 3.2e-70 268.9 187 70.1
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 7.0e-70 267.7 166 75.9
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 7.0e-70 267.7 167 77.2
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-69 266.9 194 68.6
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.6e-69 266.5 204 66.2
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 3.5e-69 265.4 174 74.7
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.0e-68 263.8 190 70.5
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 3.0e-68 262.3 186 69.9
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 6.6e-68 261.2 190 68.4
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 6.6e-68 261.2 187 67.4
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 7.3e-67 257.7 176 71.6
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 2.1e-66 256.1 167 73.7
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.8e-66 255.8 167 74.9
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.8e-65 253.1 167 71.3
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 3.1e-65 252.3 175 72.6
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.6e-64 249.2 169 71.6
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 2.6e-64 249.2 192 60.9
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.9e-64 247.3 170 70.0
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.2e-63 246.1 191 65.4
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.9e-63 245.7 177 67.8
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.9e-62 243.0 193 59.6
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.9e-62 243.0 190 60.5
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 7.1e-62 241.1 171 69.6
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 7.1e-62 241.1 192 57.3
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 9.2e-62 240.7 162 69.1
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.6e-61 240.0 173 67.1
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 6.6e-60 234.6 196 59.7
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.3e-59 231.9 189 62.4
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 5.6e-59 231.5 192 60.4
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 5.6e-59 231.5 142 77.5
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 5.6e-59 231.5 191 59.7
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.6e-58 229.9 142 79.6
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.2e-57 224.9 171 63.2
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-56 223.4 187 59.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 3.4e-56 222.2 188 55.9
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 8.4e-55 217.6 196 57.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.1e-53 213.0 186 59.1
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 7.8e-53 211.1 193 54.4
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 4.3e-51 205.3 133 72.2
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.1e-49 200.7 190 56.8
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 5.8e-48 194.9 125 74.4
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 4.9e-47 191.8 120 78.3
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 7.1e-46 188.0 117 76.9
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 7.1e-46 188.0 187 53.5
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.0e-44 182.6 183 49.7
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 2.4e-41 172.9 133 58.6
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.9e-40 167.5 171 51.5
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 4.2e-38 162.2 170 53.5
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.5e-24 117.1 116 56.0
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 6.5e-15 85.1 60 65.0
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.4e-14 84.0 52 75.0
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.4e-14 84.0 58 62.1
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.4e-12 77.4 170 35.9
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 6.3e-10 68.6 54 61.1
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 2.4e-09 66.6 199 27.1
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 2.4e-09 66.6 199 27.1
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 9.1e-09 64.7 170 26.5
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.6e-08 63.2 179 26.8
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 4.5e-08 62.4 177 27.7
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 7.7e-08 61.6 184 27.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.0e-07 61.2 178 28.1
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.3e-07 60.8 169 30.8
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.3e-07 60.8 192 30.7
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.3e-07 60.8 172 28.5
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.7e-07 60.5 170 26.5
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.2e-07 60.1 172 27.3
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.9e-07 59.7 150 28.0
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.9e-07 59.7 175 27.4
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.9e-07 59.7 172 26.7
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 2.9e-07 59.7 171 26.9
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.8e-07 59.3 180 29.4
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 6.5e-07 58.5 173 26.0
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 6.5e-07 58.5 170 27.1
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 6.5e-07 58.5 171 27.5
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 6.5e-07 58.5 171 27.5
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 6.5e-07 58.5 166 27.7
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.1e-06 57.8 175 24.0
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.1e-06 57.8 172 27.3
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.1e-06 57.8 172 27.9
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.4e-06 57.4 179 27.4
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.9e-06 57.0 188 28.2
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.9e-06 57.0 183 29.0
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.9e-06 57.0 175 25.7
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 3.2e-06 56.2 170 27.6
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 3.2e-06 56.2 179 27.9
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 4.2e-06 55.8 173 25.4
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 5.5e-06 55.5 175 29.1
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 5.5e-06 55.5 166 29.5
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 7.2e-06 55.1 172 27.3


User provided reference genes

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