Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 6.1e-88 327.4 160 100.0
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 1.3e-85 319.7 157 98.7
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.3e-85 319.7 157 98.7
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.2e-83 313.2 156 96.8
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 1.2e-83 313.2 160 93.8
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 8.6e-82 307.0 156 95.5
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.4e-79 299.7 160 94.4
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.8e-79 299.3 160 91.9
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 2.2e-77 292.4 160 88.1
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 1.0e-74 283.5 160 85.0
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.3e-74 282.3 156 87.8
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 2.9e-74 282.0 160 85.6
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 2.9e-74 282.0 160 85.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 6.6e-74 280.8 155 85.2
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.5e-73 279.6 160 85.0
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 2.5e-73 278.9 160 81.9
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 5.6e-73 277.7 160 80.6
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 5.6e-73 277.7 156 86.5
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 5.6e-73 277.7 157 85.4
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 9.5e-73 276.9 157 83.4
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.6e-72 276.2 157 84.7
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.6e-72 276.2 157 84.7
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 2.8e-72 275.4 157 82.2
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 4.7e-72 274.6 160 79.4
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 4.7e-72 274.6 160 80.6
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.7e-72 274.6 157 84.1
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 6.1e-72 274.2 160 81.2
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.0e-71 273.5 157 83.4
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.0e-71 273.5 161 83.2
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.0e-71 273.5 160 82.5
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.8e-71 272.7 160 82.5
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.3e-71 272.3 157 83.4
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.1e-71 271.9 157 83.4
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 4.0e-71 271.6 160 81.2
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 4.0e-71 271.6 160 81.9
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 5.2e-71 271.2 156 85.3
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.2e-70 270.0 160 81.2
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 2.0e-70 269.2 156 82.1
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.6e-70 268.9 157 80.3
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 3.4e-70 268.5 160 80.0
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 4.4e-70 268.1 156 80.8
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 4.4e-70 268.1 160 80.6
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 7.5e-70 267.3 156 82.7
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 9.8e-70 266.9 160 79.4
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.3e-69 266.5 157 79.0
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 1.3e-69 266.5 159 79.2
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 2.9e-69 265.4 156 78.8
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 8.3e-69 263.8 160 79.4
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 8.3e-69 263.8 160 79.4
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 1.1e-68 263.5 160 78.8
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.1e-68 263.5 160 78.8
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.4e-68 263.1 158 80.4
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.9e-68 262.7 160 79.4
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.9e-68 262.7 160 74.4
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.4e-68 262.3 161 77.0
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 3.2e-68 261.9 160 76.9
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.4e-68 261.2 165 77.0
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 5.4e-68 261.2 160 75.6
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 5.4e-68 261.2 157 79.6
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 7.0e-68 260.8 161 79.5
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.6e-67 259.6 159 78.6
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.6e-67 259.6 157 75.8
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 2.0e-67 259.2 160 78.1
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 2.7e-67 258.8 145 84.8
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.7e-67 258.8 153 81.0
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 4.6e-67 258.1 166 76.5
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 4.6e-67 258.1 154 81.2
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 6.0e-67 257.7 155 78.7
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 6.0e-67 257.7 160 76.9
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.0e-66 256.9 154 77.9
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.3e-66 256.5 156 78.8
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 2.3e-66 255.8 184 70.1
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 3.9e-66 255.0 155 78.7
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 5.0e-66 254.6 153 77.8
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 8.6e-66 253.8 153 77.1
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 8.6e-66 253.8 149 79.2
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.5e-65 253.1 156 76.3
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 1.9e-65 252.7 157 75.8
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.9e-65 252.7 153 79.1
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 1.9e-65 252.7 155 76.1
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.3e-65 251.5 159 78.0
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 9.5e-65 250.4 156 75.0
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.2e-64 250.0 141 84.4
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 2.1e-64 249.2 178 70.8
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.7e-64 248.1 160 76.9
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 6.2e-64 247.7 160 76.2
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.8e-63 246.1 165 72.1
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 1.8e-63 246.1 160 73.1
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 2.3e-63 245.7 163 76.1
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 3.1e-63 245.4 141 83.0
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 3.1e-63 245.4 160 73.1
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 5.2e-63 244.6 157 77.1
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 5.2e-63 244.6 180 68.3
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 8.9e-63 243.8 160 74.4
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 2.0e-62 242.7 142 78.2
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 144 77.8
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 3.4e-62 241.9 151 76.2
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 5.8e-62 241.1 155 72.9
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 3.7e-61 238.4 141 79.4
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 4.9e-61 238.0 160 75.6
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 4.6e-59 231.5 156 72.4
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.3e-58 229.9 156 71.8
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.5e-57 226.5 156 69.9
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.5e-57 225.7 156 69.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 4.3e-57 224.9 156 70.5
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 3.6e-56 221.9 156 70.5
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 6.2e-56 221.1 146 71.9
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 6.2e-56 221.1 156 69.2
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 6.2e-56 221.1 156 69.2
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 8.1e-56 220.7 162 66.7
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.3e-55 219.2 115 89.6
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 6.8e-55 217.6 141 73.8
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 6.8e-55 217.6 141 73.8
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 1.5e-54 216.5 158 69.6
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.5e-54 216.5 156 67.9
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.5e-54 216.5 156 67.9
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 2.0e-54 216.1 156 67.3
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 2.0e-54 216.1 156 67.3
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.1e-52 210.3 201 55.2
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 2.7e-51 205.7 156 68.6
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 5.6e-49 198.0 113 81.4
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 5.2e-47 191.4 125 72.0
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 2.0e-46 189.5 154 60.4
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 1.7e-45 186.4 118 71.2
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 2.0e-38 162.9 119 67.2
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 6.4e-37 157.9 93 80.6
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 2.4e-36 156.0 93 78.5
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 2.4e-36 156.0 150 53.3
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 6.0e-35 151.4 151 50.3
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 4.8e-32 141.7 86 79.1
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 7.6e-30 134.4 98 65.3
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.4e-28 130.2 141 47.5
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 7.9e-27 124.4 78 70.5
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 3.1e-23 112.5 125 48.0
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 2.5e-20 102.8 125 44.0
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 2.6e-14 82.8 57 75.4
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.7e-13 80.1 48 77.1


User provided reference genes

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