Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 2.4e-75 285.4 145 100.0
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.0e-74 282.3 145 97.9
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 6.0e-74 280.8 145 97.2
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 7.8e-74 280.4 145 97.2
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.7e-73 279.3 145 97.2
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.3e-73 278.9 145 96.6
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 3.3e-72 275.0 145 94.5
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 9.5e-72 273.5 145 93.1
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 1.4e-70 269.6 145 91.7
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 1.7e-68 262.7 145 89.0
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 3.7e-68 261.5 145 90.3
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 8.3e-68 260.4 145 88.3
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 4.1e-67 258.1 145 89.0
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 86.9
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 2.0e-66 255.8 145 87.6
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 4.6e-66 254.6 145 86.2
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 4.6e-66 254.6 145 86.9
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 4.6e-66 254.6 145 88.3
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 7.8e-66 253.8 145 87.6
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 7.8e-66 253.8 145 87.6
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 1.0e-65 253.4 145 84.1
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.7e-65 252.7 145 87.6
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.7e-65 252.7 145 86.9
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 1.7e-65 252.7 145 85.5
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 86.9
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 3.9e-65 251.5 144 85.4
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 5.0e-65 251.1 145 85.5
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 5.0e-65 251.1 145 85.5
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 5.0e-65 251.1 145 86.2
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 6.6e-65 250.8 145 85.5
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 6.6e-65 250.8 145 83.4
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 6.6e-65 250.8 145 86.2
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 8.6e-65 250.4 145 83.4
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 1.1e-64 250.0 144 85.4
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.1e-64 250.0 145 86.2
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 2.5e-64 248.8 145 84.8
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 2.5e-64 248.8 145 84.8
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 2.5e-64 248.8 146 85.6
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 84.8
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 5.6e-64 247.7 145 84.1
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 1.6e-63 246.1 145 84.8
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 82.8
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 82.8
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 4.7e-63 244.6 145 81.4
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 6.2e-63 244.2 145 83.4
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 6.2e-63 244.2 145 83.4
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 8.1e-63 243.8 145 84.1
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 80.0
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 83.4
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 83.4
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.8e-62 242.7 145 82.1
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 82.2
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 83.4
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 5.2e-62 241.1 146 81.5
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 6.8e-62 240.7 149 81.9
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 8.9e-62 240.4 145 81.4
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 8.9e-62 240.4 146 82.2
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 8.9e-62 240.4 146 82.2
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 1.5e-61 239.6 145 81.4
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.5e-61 239.6 147 80.3
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 82.9
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 2.6e-61 238.8 148 81.8
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 3.4e-61 238.4 145 77.9
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 3.4e-61 238.4 145 81.4
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 82.9
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 4.4e-61 238.0 145 83.4
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 7.5e-61 237.3 146 80.1
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 7.5e-61 237.3 145 81.4
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 7.5e-61 237.3 146 82.2
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 79.5
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 79.5
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 80.1
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.3e-60 236.5 145 78.6
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 80.8
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 1.7e-60 236.1 145 78.6
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.7e-60 236.1 147 82.3
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 78.8
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 79.5
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 78.8
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 78.8
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 78.1
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 3.7e-60 235.0 138 83.3
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 4.9e-60 234.6 146 79.5
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.9e-60 234.6 146 81.5
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 8.3e-60 233.8 146 78.1
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 8.3e-60 233.8 146 78.1
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.4e-59 233.0 145 79.3
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 78.8
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 80.8
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 80.8
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 77.4
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 77.4
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 77.4
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 78.8
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 79.5
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 78.8
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 80.1
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 76.7
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 5.4e-59 231.1 145 79.3
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 7.1e-59 230.7 145 77.9
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 79.5
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.2e-58 229.9 145 77.2
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 76.7
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.6e-58 229.6 142 78.9
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 80.1
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 78.8
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 76.7
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 77.4
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 76.7
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 76.7
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 76.7
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 76.7
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 79.5
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 3.5e-58 228.4 137 83.2
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 78.1
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 4.6e-58 228.0 145 80.0
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 4.6e-58 228.0 145 80.0
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 80.1
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 76.0
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 76.0
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 78.1
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 80.1
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 79.5
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 1.7e-57 226.1 146 76.0
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 1.7e-57 226.1 145 75.9
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 1.7e-57 226.1 143 81.1
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 76.0
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 76.0
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 3.0e-57 225.3 145 75.2
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 3.0e-57 225.3 145 77.2
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.1
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 3.9e-57 224.9 144 77.1
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.9e-57 224.9 145 77.2
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 8.6e-57 223.8 146 75.3
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 8.6e-57 223.8 145 77.2
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 1.5e-56 223.0 145 77.2
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 4.3e-56 221.5 145 74.5
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 7.3e-56 220.7 145 74.5
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 1.4e-54 216.5 146 74.0
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 2.4e-54 215.7 146 72.6
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 2.4e-54 215.7 136 76.5
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 5.2e-54 214.5 147 74.8
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 6.8e-54 214.2 145 75.9
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 8.9e-54 213.8 146 77.4
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 1.2e-53 213.4 147 73.5
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 2.9e-52 208.8 146 70.5
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 4.9e-52 208.0 146 73.3
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 8.4e-52 207.2 129 78.3
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.2e-51 205.3 146 75.3
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 1.1e-48 196.8 147 70.7
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 7.3e-48 194.1 145 69.7
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 7.3e-48 194.1 103 89.3
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 9.0e-46 187.2 103 85.4
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 4.9e-44 181.4 102 84.3
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 2.7e-42 175.6 147 61.2
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 3.0e-41 172.2 137 70.1
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 8.1e-39 164.1 98 83.7
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.4e-38 163.3 139 58.3
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 1.8e-38 162.9 85 92.9
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 5.3e-38 161.4 136 57.4
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 2.7e-34 149.1 150 56.0
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 3.5e-34 148.7 85 84.7
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 7.4e-32 141.0 145 56.6
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 3.7e-31 138.7 145 55.9
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 4.8e-31 138.3 142 52.1
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 4.9e-28 128.3 146 56.8
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 1.4e-27 126.7 85 72.9
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.6e-26 123.2 72 76.4
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 6.7e-25 117.9 60 96.7
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 2.8e-23 112.5 74 75.7
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 1.3e-20 103.6 74 73.0
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 5.1e-17 91.7 126 42.9
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 1.0e-12 77.4 124 46.0
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 6.5e-12 74.7 110 41.8
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 5.5e-11 71.6 142 38.0
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 9.4e-11 70.9 33 97.0
TAR629G2234 Trochodendron aralioides HOM05D002207 ORTHO05D002250 6.3e-07 58.2 43 74.4


User provided reference genes

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