Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.0e-49 200.3 145 100.0
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.8e-38 162.9 145 88.3
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 7.1e-19 97.8 103 59.2
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 6.7e-17 91.3 104 60.6
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 9.0e-14 80.9 43 81.4
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.2e-13 80.5 73 58.9
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.2e-13 80.5 59 69.5
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.2e-13 80.5 40 87.5
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.2e-13 80.5 41 87.8
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.2e-13 80.5 99 47.5
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.5e-13 80.1 42 88.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.5e-13 80.1 42 88.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.5e-13 80.1 42 88.1
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.5e-13 80.1 43 83.7
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 2.0e-13 79.7 79 55.7
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 2.0e-13 79.7 40 87.5
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 2.6e-13 79.3 40 87.5
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 4.5e-13 78.6 105 54.3
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 7.7e-13 77.8 74 59.5
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.0e-12 77.4 98 65.3
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-12 77.0 42 85.7
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.3e-12 77.0 42 85.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.7e-12 76.6 66 66.7
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.2e-12 76.3 91 47.3
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.2e-12 76.3 38 89.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.9e-12 75.9 54 72.2
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 2.9e-12 75.9 40 85.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.9e-12 75.9 90 75.6
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.9e-12 75.9 42 83.3
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 3.8e-12 75.5 95 46.3
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.8e-12 75.5 91 47.3
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 3.8e-12 75.5 97 46.4
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.8e-12 75.5 90 50.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.0e-12 75.1 40 82.5
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.0e-12 75.1 40 82.5
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 5.0e-12 75.1 43 79.1
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.0e-12 75.1 42 83.3
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 5.0e-12 75.1 91 48.4
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 6.5e-12 74.7 91 51.6
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 6.5e-12 74.7 40 85.0
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.5e-12 74.7 42 81.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 6.5e-12 74.7 57 68.4
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 8.5e-12 74.3 58 62.1
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 8.5e-12 74.3 36 91.7
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 8.5e-12 74.3 43 83.7
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 8.5e-12 74.3 43 83.7
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 8.5e-12 74.3 52 71.2
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.1e-11 73.9 35 94.3
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-11 73.9 42 81.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.1e-11 73.9 42 81.0
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.1e-11 73.9 54 70.4
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.4e-11 73.6 92 55.4
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.4e-11 73.6 101 47.5
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.4e-11 73.6 40 87.5
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.9e-11 73.2 44 79.5
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.9e-11 73.2 49 67.3
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.9e-11 73.2 38 86.8
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.9e-11 73.2 60 58.3
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.9e-11 73.2 53 69.8
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.5e-11 72.8 40 85.0
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 3.2e-11 72.4 49 75.5
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 3.2e-11 72.4 49 75.5
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 3.2e-11 72.4 49 75.5
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 3.2e-11 72.4 49 75.5
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 3.2e-11 72.4 49 75.5
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.2e-11 72.4 40 85.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.2e-11 72.4 40 85.0
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 3.2e-11 72.4 40 82.5
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 3.2e-11 72.4 40 80.0
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 3.2e-11 72.4 48 72.9
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.2e-11 72.0 40 85.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.2e-11 72.0 94 45.7
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 4.2e-11 72.0 40 82.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 4.2e-11 72.0 40 85.0
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 4.2e-11 72.0 95 45.3
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 5.5e-11 71.6 53 69.8
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 5.5e-11 71.6 60 61.7
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 5.5e-11 71.6 43 81.4
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 7.2e-11 71.2 101 41.6
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 7.2e-11 71.2 35 91.4
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 7.2e-11 71.2 40 82.5
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 7.2e-11 71.2 90 46.7
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 7.2e-11 71.2 35 91.4
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 7.2e-11 71.2 35 91.4
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 7.2e-11 71.2 35 91.4
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 7.2e-11 71.2 35 91.4
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 7.2e-11 71.2 35 91.4
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 7.2e-11 71.2 40 82.5
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 7.2e-11 71.2 38 81.6
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.2e-11 71.2 40 82.5
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 9.4e-11 70.9 98 44.9
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.4e-11 70.9 38 78.9
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.2e-10 70.5 40 80.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.6e-10 70.1 104 45.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.6e-10 70.1 35 88.6
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.6e-10 70.1 58 60.3
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.6e-10 70.1 42 76.2
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.6e-10 70.1 38 84.2
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.6e-10 70.1 95 46.3
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.1e-10 69.7 40 77.5
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 2.7e-10 69.3 60 66.7
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 2.7e-10 69.3 86 47.7
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.7e-10 69.3 32 93.8
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 3.6e-10 68.9 72 50.0
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 3.6e-10 68.9 50 72.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 3.6e-10 68.9 50 72.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 3.6e-10 68.9 85 45.9
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 4.6e-10 68.6 40 77.5
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.6e-10 68.6 40 77.5
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-09 67.4 40 75.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.0e-09 67.4 73 50.7
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.4e-09 67.0 61 59.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.4e-09 67.0 32 90.6
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.8e-09 66.6 32 87.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.3e-09 66.2 47 72.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.3e-09 66.2 52 63.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.9e-09 65.5 32 87.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 5.1e-09 65.1 35 82.9
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 8.8e-09 64.3 32 81.2
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.5e-08 63.5 32 81.2
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.0e-08 63.2 42 71.4
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.5e-08 62.8 115 56.5
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.5e-08 62.8 32 81.2
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.5e-08 62.8 32 81.2
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 5.7e-08 61.6 46 63.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 2.2e-07 59.7 42 64.3


User provided reference genes

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