Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 1.6e-89 332.8 171 100.0
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 1.3e-64 250.0 171 78.9
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 1.3e-64 250.0 171 78.9
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 8.6e-64 247.3 171 77.8
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 4.7e-62 241.5 169 75.7
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 7.5e-60 234.2 169 72.8
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 3.0e-56 222.2 169 66.3
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 8.6e-56 220.7 172 66.3
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.5e-55 219.9 171 64.3
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 4.3e-55 218.4 169 65.1
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 9.5e-55 217.2 169 65.7
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 1.3e-51 206.8 171 63.7
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 1.1e-50 203.8 169 62.1
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 3.2e-50 202.2 174 63.2
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 4.1e-50 201.8 174 61.5
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 3.5e-49 198.7 180 59.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 3.5e-49 198.7 170 59.4
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 1.7e-48 196.4 170 60.6
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 1.7e-48 196.4 169 59.2
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 3.0e-48 195.7 170 60.6
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 3.9e-48 195.3 170 61.2
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 6.6e-48 194.5 165 60.6
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 6.6e-48 194.5 170 60.0
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 8.6e-48 194.1 171 57.9
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 3.6e-46 188.7 170 59.4
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.8e-45 186.4 169 55.6
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 2.4e-45 186.0 169 56.2
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 3.1e-45 185.7 171 55.6
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 3.1e-45 185.7 169 54.4
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 3.1e-45 185.7 171 59.1
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 3.1e-45 185.7 170 57.1
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 4.0e-45 185.3 169 54.4
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 4.0e-45 185.3 169 54.4
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 4.0e-45 185.3 169 54.4
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 6.8e-45 184.5 169 54.4
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 6.8e-45 184.5 169 54.4
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 4.4e-44 181.8 173 54.9
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 9.9e-44 180.6 175 58.3
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 1.7e-43 179.9 173 54.3
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 3.8e-43 178.7 173 54.9
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 4.9e-43 178.3 169 54.4
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.1e-42 177.2 174 56.9
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.9e-42 176.4 174 56.9
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 1.9e-42 176.4 174 56.9
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 4.2e-42 175.3 175 52.0
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 4.2e-42 175.3 161 57.8
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 5.4e-42 174.9 168 54.2
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 1.6e-41 173.3 170 55.9
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 2.1e-41 172.9 169 53.3
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 3.5e-41 172.2 159 54.1
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 6.0e-41 171.4 169 54.4
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 1.0e-40 170.6 172 52.3
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.0e-40 170.6 169 53.8
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 1.7e-40 169.9 169 53.3
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 2.3e-40 169.5 159 53.5
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 5.1e-40 168.3 172 52.3
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 8.7e-40 167.5 177 51.4
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 7.3e-39 164.5 170 50.0
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 9.6e-39 164.1 170 50.6
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.6e-38 162.2 169 52.7
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 2.4e-37 159.5 167 50.3
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 4.0e-37 158.7 169 52.1
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 2.0e-36 156.4 169 50.3
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 3.4e-36 155.6 175 47.4
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 5.8e-36 154.8 176 47.7
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 9.9e-36 154.1 171 51.5
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.2e-35 152.9 165 52.1
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 2.9e-35 152.5 170 50.0
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 3.8e-35 152.1 170 49.4
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 4.9e-35 151.8 170 50.0
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 4.9e-35 151.8 170 50.0
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 1.4e-34 150.2 169 50.9
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.4e-34 149.4 171 48.5
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 5.4e-34 148.3 168 49.4
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 7.1e-34 147.9 169 47.3
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 9.3e-34 147.5 144 51.4
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 9.3e-34 147.5 171 49.1
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 6.0e-33 144.8 169 46.2
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 2.3e-32 142.9 169 47.3
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 8.7e-32 141.0 169 48.5
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 4.3e-31 138.7 170 45.9
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 9.0e-29 131.0 170 44.7
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 9.9e-28 127.5 123 56.9
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 1.3e-27 127.1 169 45.6
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 2.2e-27 126.3 170 45.3
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.9e-26 123.2 168 42.9
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.9e-26 123.2 170 42.4
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 2.4e-26 122.9 170 42.9
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 2.7e-25 119.4 147 46.9
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 3.5e-25 119.0 144 47.2
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 1.9e-23 113.2 169 40.2
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 9.0e-21 104.4 170 40.0
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 9.0e-21 104.4 141 39.7
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 5.5e-18 95.1 132 40.9
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 6.0e-17 91.7 151 38.4
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 1.5e-15 87.0 105 44.8
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 1.3e-14 84.0 140 36.4
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 1.5e-12 77.0 133 35.3
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 8.4e-11 71.2 141 33.3
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 2.1e-09 66.6 81 48.1
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 6.7e-08 61.6 177 28.8
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 4.3e-07 58.9 77 45.5
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 2.8e-06 56.2 71 45.1


User provided reference genes

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