Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 1.0e-41 172.9 84 100.0
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 3.9e-25 117.9 77 74.0
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 8.3e-20 100.1 82 62.2
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.1e-19 99.8 73 67.1
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 3.2e-19 98.2 77 63.6
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.9e-17 91.3 71 64.8
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 5.1e-17 90.9 73 65.8
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 8.6e-17 90.1 79 62.0
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.5e-16 89.4 72 56.9
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 3.3e-16 88.2 68 67.6
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 7.3e-16 87.0 74 59.5
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 2.8e-15 85.1 79 54.4
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 2.8e-15 85.1 70 61.4
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 2.8e-15 85.1 70 61.4
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 6.2e-15 84.0 78 61.5
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 3.1e-14 81.6 66 65.2
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 4.0e-14 81.3 73 57.5
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 5.2e-14 80.9 68 66.2
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.5e-13 79.3 70 54.3
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.5e-13 79.3 68 64.7
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 1.5e-13 79.3 78 53.8
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 2.0e-13 79.0 78 53.8
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 3.4e-13 78.2 72 54.2
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 5.8e-13 77.4 72 56.9
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 9.9e-13 76.6 74 52.7
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.3e-12 76.3 72 55.6
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.3e-12 76.3 72 61.1
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.3e-12 76.3 72 61.1
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.7e-12 75.9 72 61.1
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 2.2e-12 75.5 75 53.3
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 3.8e-12 74.7 75 56.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 3.8e-12 74.7 70 54.3
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.8e-12 74.7 76 53.9
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 4.9e-12 74.3 73 56.2
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 6.4e-12 73.9 78 51.3
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 8.4e-12 73.6 77 49.4
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 1.1e-11 73.2 72 55.6
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.1e-11 73.2 72 51.4
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 1.4e-11 72.8 74 50.0
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.4e-11 72.8 75 52.0
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.9e-11 72.4 71 50.7
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.4e-11 72.0 71 49.3
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 2.4e-11 72.0 68 54.4
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 2.4e-11 72.0 78 48.7
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.4e-11 72.0 69 50.7
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 3.2e-11 71.6 67 52.2
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 4.1e-11 71.2 68 52.9
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 4.1e-11 71.2 72 54.2
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 5.4e-11 70.9 78 48.7
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 5.4e-11 70.9 68 60.3
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 7.1e-11 70.5 78 44.9
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 7.1e-11 70.5 72 50.0
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 7.1e-11 70.5 73 52.1
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 9.2e-11 70.1 70 51.4
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 1.2e-10 69.7 80 47.5
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.2e-10 69.7 72 51.4
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.6e-10 69.3 74 48.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.6e-10 69.3 68 54.4
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.1e-10 68.9 76 51.3
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 2.7e-10 68.6 75 49.3
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 2.7e-10 68.6 68 47.1
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 3.5e-10 68.2 71 49.3
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.5e-10 68.2 71 49.3
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.5e-10 68.2 71 49.3
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 4.6e-10 67.8 68 54.4
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 4.6e-10 67.8 69 55.1
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 6.0e-10 67.4 72 45.8
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 6.0e-10 67.4 71 49.3
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.0e-10 67.4 76 47.4
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 7.8e-10 67.0 68 48.5
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 7.8e-10 67.0 66 53.0
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.0e-09 66.6 72 47.2
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.0e-09 66.6 69 49.3
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 1.0e-09 66.6 75 41.3
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.3e-09 66.2 71 50.7
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.7e-09 65.9 71 50.7
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 2.3e-09 65.5 74 50.0
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 2.3e-09 65.5 76 47.4
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.3e-09 65.5 71 53.5
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.3e-09 65.5 74 44.6
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 3.0e-09 65.1 80 47.5
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 3.0e-09 65.1 72 45.8
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 3.0e-09 65.1 69 53.6
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.0e-09 65.1 75 46.7
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.0e-09 65.1 75 46.7
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.0e-09 65.1 75 46.7
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 3.0e-09 65.1 71 46.5
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 3.0e-09 65.1 71 54.9
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.9e-09 64.7 76 42.1
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.9e-09 64.7 71 45.1
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 3.9e-09 64.7 69 46.4
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 5.1e-09 64.3 79 49.4
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 5.1e-09 64.3 68 45.6
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 6.6e-09 63.9 70 48.6
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 6.6e-09 63.9 61 52.5
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 6.6e-09 63.9 68 51.5
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 8.7e-09 63.5 74 48.6
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 8.7e-09 63.5 71 49.3
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 8.7e-09 63.5 69 47.8
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.1e-08 63.2 67 49.3
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 1.5e-08 62.8 68 47.1
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.9e-08 62.4 78 43.6
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.9e-08 62.4 72 44.4
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.9e-08 62.4 68 45.6
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.5e-08 62.0 76 40.8
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.5e-08 62.0 70 48.6
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 3.3e-08 61.6 67 49.3
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 4.3e-08 61.2 67 47.8
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.3e-08 61.2 75 45.3
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 4.3e-08 61.2 73 47.9
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 4.3e-08 61.2 71 46.5
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 5.6e-08 60.8 70 44.3
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.6e-08 60.8 75 44.0
RcHm_v2.0_Chr2g0090671 Rosa chinensis HOM05D003277 ORTHO05D003275 5.6e-08 60.8 65 50.8
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 7.3e-08 60.5 75 48.0
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 9.6e-08 60.1 68 47.1
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 9.6e-08 60.1 69 43.5
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.6e-08 60.1 69 43.5
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.6e-08 60.1 69 43.5
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.6e-08 60.1 64 48.4
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 9.6e-08 60.1 64 48.4
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 9.6e-08 60.1 66 51.5
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 9.6e-08 60.1 67 46.3
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.2e-07 59.7 78 42.3
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.2e-07 59.7 71 42.3
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 1.6e-07 59.3 60 56.7
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.6e-07 59.3 69 42.0
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 1.6e-07 59.3 72 44.4
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.1e-07 58.9 69 43.5
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.1e-07 58.9 64 46.9
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 2.1e-07 58.9 67 47.8
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.8e-07 58.5 69 42.0
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 2.8e-07 58.5 68 42.6
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 2.8e-07 58.5 65 52.3
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 2.8e-07 58.5 64 46.9
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 2.8e-07 58.5 64 46.9
Medtr4g012460 Medicago truncatula HOM05D003277 ORTHO05D003275 2.8e-07 58.5 74 44.6
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 2.8e-07 58.5 71 49.3
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 3.6e-07 58.2 75 42.7
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 4.7e-07 57.8 72 50.0
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 4.7e-07 57.8 74 45.9
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 6.2e-07 57.4 64 43.8
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 8.1e-07 57.0 76 43.4
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 8.1e-07 57.0 75 44.0
Nitab4.5_0011350g0020 Nicotiana tabacum HOM05D003277 ORTHO05D003275 8.1e-07 57.0 69 47.8
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 8.1e-07 57.0 78 41.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-06 56.6 69 43.5
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 1.1e-06 56.6 82 42.7
unitig_578.g16687 Utricularia gibba HOM05D003277 ORTHO05D003275 1.1e-06 56.6 68 44.1
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.4e-06 56.2 68 48.5
Sc21g0005130 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.4e-06 56.2 68 47.1
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.8e-06 55.8 69 44.9
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 1.8e-06 55.8 71 42.3
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.4e-06 55.5 69 42.0
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 2.4e-06 55.5 60 48.3
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.1e-06 55.1 63 47.6
Lsat_1_v5_gn_8_93781 Lactuca sativa HOM05D000750 ORTHO05D000714 3.1e-06 55.1 64 43.8
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 3.1e-06 55.1 79 40.5
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 3.1e-06 55.1 71 43.7
HPP92_008676 Vanilla planifolia HOM05D003277 ORTHO05D003275 3.1e-06 55.1 70 45.7
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 4.0e-06 54.7 73 41.1
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 4.0e-06 54.7 71 39.4
Medtr4g012490 Medicago truncatula HOM05D003277 ORTHO05D003275 5.2e-06 54.3 78 43.6
HPP92_008689 Vanilla planifolia HOM05D003277 ORTHO05D003275 5.2e-06 54.3 70 45.7
EL10Ac8g18510 Beta vulgaris HOM05D003277 ORTHO05D003275 6.9e-06 53.9 63 49.2
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 6.9e-06 53.9 79 43.0
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 6.9e-06 53.9 67 43.3
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 6.9e-06 53.9 71 45.1
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 6.9e-06 53.9 72 43.1
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 6.9e-06 53.9 70 42.9
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 9.0e-06 53.5 68 44.1
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 9.0e-06 53.5 74 47.3
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 9.0e-06 53.5 65 46.2


User provided reference genes

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