Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.7e-135 486.1 264 100.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.6e-101 372.1 264 82.2
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 6.7e-100 367.9 257 82.5
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.3e-63 247.3 272 60.7
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 2.0e-59 233.4 269 56.9
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.0e-47 193.0 261 49.0
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.4e-44 183.3 278 46.8
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 4.4e-43 179.1 257 49.4
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 7.1e-41 171.8 281 46.3
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 9.3e-41 171.4 135 69.6
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.3e-38 162.5 166 62.0
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 4.3e-38 162.5 264 43.9
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 1.8e-36 157.1 155 57.4
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.4e-36 156.8 276 42.4
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 2.4e-36 156.8 155 58.1
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 6.9e-36 155.2 251 44.2
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.1e-33 147.9 307 40.1
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.9e-33 147.1 286 42.0
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 4.2e-33 146.0 170 54.1
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 4.2e-33 146.0 300 39.7
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 7.1e-33 145.2 297 40.7
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 4.6e-32 142.5 304 39.5
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.3e-31 141.0 256 42.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 3.0e-31 139.8 309 37.5
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 3.0e-31 139.8 273 40.3
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 3.0e-31 139.8 291 38.8
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 3.9e-31 139.4 268 41.0
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.7e-31 138.3 298 37.6
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 2.5e-30 136.7 286 39.9
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 4.3e-30 136.0 301 37.5
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 7.4e-30 135.2 241 42.7
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.6e-29 134.0 262 36.6
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.1e-29 133.7 298 36.9
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 3.6e-29 132.9 298 37.2
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.1e-28 131.3 240 40.0
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 1.1e-28 131.3 307 37.8
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.1e-28 131.3 292 39.4
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-28 131.0 262 37.0
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 6.9e-28 128.6 257 40.5
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.5e-27 127.5 255 40.4
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.5e-27 127.5 257 40.5
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.5e-27 127.5 251 41.4
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.5e-27 127.5 295 36.3
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 3.4e-27 126.3 292 36.0
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 9.9e-27 124.8 247 41.7
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.7e-26 124.0 253 36.0
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.2e-26 123.6 140 50.0
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.2e-26 123.6 140 50.0
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 3.8e-26 122.9 301 35.9
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 3.8e-26 122.9 270 34.4
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 3.8e-26 122.9 239 41.0
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.9e-26 122.5 300 35.7
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.1e-25 121.3 260 38.1
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.1e-25 121.3 252 40.9
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 7.1e-25 118.6 249 35.7
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 9.3e-25 118.2 301 34.2
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 1.2e-24 117.9 178 40.4
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 1.6e-24 117.5 283 37.8
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 1.6e-24 117.5 109 57.8
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.1e-24 117.1 262 37.4
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 6.0e-24 115.5 248 38.7
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 6.0e-24 115.5 138 50.0
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 6.0e-24 115.5 260 34.2
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 7.9e-24 115.2 257 37.7
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.3e-23 114.4 266 34.6
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.3e-23 113.6 267 34.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 2.3e-23 113.6 278 36.7
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.9e-23 112.8 173 43.4
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 5.1e-23 112.5 287 33.4
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 6.7e-23 112.1 263 33.5
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.1e-22 111.3 255 35.3
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.5e-22 110.9 287 35.9
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.5e-22 110.9 261 35.2
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.9e-22 110.5 290 33.1
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.5e-22 110.2 290 33.1
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.3e-22 109.8 287 34.5
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 4.3e-22 109.4 319 33.5
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 5.6e-22 109.0 287 34.5
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 7.4e-22 108.6 174 43.7
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.6e-21 107.5 256 36.3
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.6e-21 107.5 286 34.6
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.6e-21 107.5 274 32.8
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.1e-21 107.1 259 34.4
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.8e-21 106.7 270 32.6
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.8e-21 106.7 262 32.8
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 8.1e-21 105.1 273 38.8
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.8e-20 104.0 287 35.9
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 2.4e-20 103.6 284 34.9
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 5.3e-20 102.4 293 33.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 5.3e-20 102.4 251 35.5
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 9.0e-20 101.7 272 33.8
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.2e-19 101.3 285 32.3
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.2e-19 101.3 285 33.3
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.6e-19 100.1 263 33.8
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 2.6e-19 100.1 279 32.3
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 3.4e-19 99.8 129 52.7
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 4.5e-19 99.4 280 34.6
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.6e-19 98.6 287 32.8
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 3.8e-18 96.3 109 55.0
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 3.8e-18 96.3 109 55.0
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.8e-18 96.3 260 33.5
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.9e-18 95.9 281 29.2
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.9e-18 95.9 268 32.1
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 4.9e-18 95.9 270 33.3
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 6.5e-18 95.5 286 31.1
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 6.5e-18 95.5 275 33.5
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.9e-17 94.0 319 28.8
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 3.2e-17 93.2 281 32.4
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 3.2e-17 93.2 256 34.8
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 3.2e-17 93.2 271 32.1
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 3.2e-17 93.2 297 30.3
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 7.1e-17 92.0 288 31.2
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 7.1e-17 92.0 271 34.7
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 9.3e-17 91.7 280 30.7
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 9.3e-17 91.7 295 31.9
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.2e-16 91.3 280 32.1
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.2e-16 91.3 299 30.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.2e-16 91.3 285 33.7
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 1.2e-16 91.3 294 31.0
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.2e-16 91.3 259 30.9
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.1e-16 90.5 252 32.9
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.1e-16 90.5 286 33.6
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.1e-16 90.5 294 31.3
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 4.6e-16 89.4 273 29.7
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 4.6e-16 89.4 251 33.1
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 4.6e-16 89.4 244 31.1
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 6.0e-16 89.0 260 32.3
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 6.0e-16 89.0 268 31.3
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 6.0e-16 89.0 268 31.3
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.3e-15 87.0 257 30.7
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.0e-15 86.7 284 32.0
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 3.9e-15 86.3 272 32.4
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 5.1e-15 85.9 278 31.3
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 6.7e-15 85.5 278 31.3
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 8.7e-15 85.1 270 30.7
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 8.7e-15 85.1 270 30.7
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 8.7e-15 85.1 278 30.2
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.1e-14 84.7 326 30.7
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.5e-14 84.3 226 30.5
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.5e-14 84.3 265 33.6
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.9e-14 84.0 261 31.0
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 1.9e-14 84.0 286 30.4
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 2.5e-14 83.6 273 30.8
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 5.7e-14 82.4 263 28.9
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.6e-13 80.9 307 26.4
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.8e-13 80.1 288 29.5
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.7e-13 79.7 281 28.5
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 6.3e-13 79.0 276 29.0
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 6.3e-13 79.0 217 31.8
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 6.3e-13 79.0 351 28.5
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.1e-12 78.2 276 29.3
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 1.4e-12 77.8 135 41.5
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.4e-12 77.0 279 29.0
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 4.1e-12 76.3 283 29.3
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 4.1e-12 76.3 346 28.0
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 5.3e-12 75.9 270 28.5
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 9.0e-12 75.1 286 28.0
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 9.0e-12 75.1 242 32.2
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.2e-11 74.7 274 29.6
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 2.0e-11 73.9 280 30.0
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.0e-11 73.9 275 28.7
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.0e-11 73.9 281 28.5
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 2.6e-11 73.6 274 28.8
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 2.6e-11 73.6 285 28.4
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 7.6e-11 72.0 285 27.0
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.7e-10 70.9 269 28.3
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 2.2e-10 70.5 279 29.7
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 3.8e-10 69.7 271 27.3
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.0e-10 69.3 204 30.4
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.5e-10 68.9 279 26.9
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 7.2e-09 65.5 177 30.5
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 7.2e-09 65.5 286 26.6
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 9.3e-09 65.1 134 32.8
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 2.1e-08 63.9 131 35.1
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 2.7e-08 63.5 247 26.7
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.0e-07 61.6 305 27.2
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 3.9e-07 59.7 253 26.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 6.7e-07 58.9 210 25.7
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.9e-06 57.4 255 27.1
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 7.4e-06 55.5 102 39.2


User provided reference genes

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