Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.4e-81 306.2 155 100.0
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.9e-79 298.5 155 95.5
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 4.3e-78 294.7 153 94.8
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.3e-78 294.7 154 94.2
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-77 293.1 153 94.1
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.4e-76 289.7 153 94.1
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 3.9e-71 271.6 155 87.7
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 5.6e-70 267.7 155 86.5
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.6e-69 266.2 155 85.2
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 3.1e-68 261.9 155 83.2
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 5.2e-68 261.2 155 83.9
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.2e-67 260.0 154 82.5
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 2.6e-67 258.8 155 81.3
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.4e-67 258.1 155 81.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 2.2e-66 255.8 155 80.6
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 2.2e-66 255.8 155 80.6
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.9e-66 254.6 153 81.0
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.4e-66 254.2 155 79.4
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.9e-65 252.7 155 78.1
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 81.0
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 81.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 2.4e-65 252.3 155 80.0
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 3.2e-65 251.9 155 81.3
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 3.2e-65 251.9 153 81.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 4.1e-65 251.5 155 78.1
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.1e-65 251.5 155 80.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 5.4e-65 251.1 155 79.4
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 5.4e-65 251.1 155 78.1
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.4e-65 251.1 153 81.0
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 9.2e-65 250.4 155 79.4
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.2e-65 250.4 155 80.0
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.2e-65 250.4 150 80.7
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 9.2e-65 250.4 153 81.7
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.2e-64 250.0 155 79.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.6e-64 249.6 155 77.4
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 2.1e-64 249.2 153 79.7
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.1e-64 249.2 152 80.3
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 2.7e-64 248.8 155 80.6
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 3.5e-64 248.4 155 77.4
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 3.5e-64 248.4 155 78.7
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 3.5e-64 248.4 155 78.7
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.5e-64 248.4 155 78.1
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 4.6e-64 248.1 155 78.1
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 6.0e-64 247.7 155 78.7
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 7.8e-64 247.3 153 78.4
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.0e-63 246.9 155 76.8
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-63 246.5 153 76.5
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-63 246.5 155 78.1
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.3e-63 246.5 152 79.6
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.7e-63 246.1 152 79.6
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.3e-63 245.7 152 77.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.3e-63 245.7 153 79.1
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 2.3e-63 245.7 155 77.4
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.3e-63 245.7 155 76.8
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.9e-63 245.0 155 76.8
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.9e-63 245.0 145 80.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 5.1e-63 244.6 155 76.1
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.1e-63 244.6 152 80.3
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 5.1e-63 244.6 153 77.1
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 6.6e-63 244.2 155 78.7
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.6e-63 243.8 152 75.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.6e-63 243.8 155 74.8
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.1e-62 243.4 155 76.8
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.1e-62 243.4 155 74.8
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.1e-62 243.4 155 76.1
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.1e-62 243.4 153 77.8
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 77.1
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.9e-62 242.7 152 78.3
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 1.9e-62 242.7 143 79.7
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 75.8
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 2.5e-62 242.3 155 76.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 3.3e-62 241.9 155 74.2
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.3e-62 241.5 154 76.6
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 4.3e-62 241.5 153 77.1
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 5.6e-62 241.1 152 77.0
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 5.6e-62 241.1 152 76.3
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 5.6e-62 241.1 153 76.5
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 5.6e-62 241.1 155 74.8
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 7.3e-62 240.7 155 75.5
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 7.3e-62 240.7 155 73.5
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.6e-61 239.6 145 78.6
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 4.7e-61 238.0 155 75.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-60 235.7 155 74.2
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 3.1e-60 235.3 155 74.8
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 3.1e-60 235.3 155 76.1
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 3.1e-60 235.3 155 74.8
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 5.2e-60 234.6 153 75.2
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.2e-59 233.4 154 74.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.2e-59 233.4 155 73.5
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.5e-59 233.0 155 71.0
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 5.8e-59 231.1 153 71.9
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 7.5e-59 230.7 155 71.0
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.3e-58 229.9 153 73.9
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.3e-58 229.9 152 73.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 6.4e-58 227.6 152 73.7
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 6.4e-58 227.6 153 73.2
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 2.4e-57 225.7 153 74.5
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 3.2e-57 225.3 149 69.8
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 7.1e-57 224.2 152 71.1
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 9.2e-57 223.8 155 69.0
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 9.2e-57 223.8 155 68.4
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.2e-56 223.4 151 72.2
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.1e-56 222.6 146 70.5
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.1e-56 222.6 155 69.7
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 2.7e-56 222.2 155 67.1
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 4.6e-56 221.5 152 69.1
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 67.1
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 67.7
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.7e-55 219.5 155 68.4
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.9e-55 218.4 155 67.7
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 6.6e-55 217.6 155 67.7
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.5e-54 216.5 153 67.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.9e-54 216.1 152 66.4
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.9e-54 216.1 152 65.8
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.9e-54 216.1 150 72.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.5e-54 215.7 152 65.8
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.5e-54 215.7 152 73.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 5.6e-54 214.5 154 64.3
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 9.5e-54 213.8 153 64.7
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.2e-53 213.4 152 66.4
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.6e-53 213.0 152 65.1
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 7.6e-51 204.1 170 60.0
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 2.2e-50 202.6 149 62.4
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.4e-49 199.9 145 61.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 3.5e-48 195.3 155 61.9
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 7.8e-48 194.1 121 76.0
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.0e-47 193.7 122 77.0
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.7e-47 193.0 145 65.5
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.9e-46 189.5 124 73.4
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-44 183.7 152 60.5
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.6e-43 179.1 113 75.2
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 7.6e-43 177.6 149 54.4
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.9e-41 172.9 130 62.3
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.4e-41 172.6 113 71.7
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 4.3e-38 161.8 183 52.5
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.3e-34 150.2 151 50.3
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 4.9e-34 148.3 95 76.8
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.0e-31 140.6 124 61.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.8e-31 139.8 150 46.7
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-28 130.2 77 79.2
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 9.0e-28 127.5 80 77.5
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.8e-27 124.8 100 62.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 7.6e-27 124.4 74 82.4
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.6e-24 116.7 77 68.8
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.1e-24 116.3 69 76.8
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 4.6e-24 115.2 74 75.7
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.0e-23 114.0 83 69.9
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-23 112.8 67 76.1
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.3e-23 112.8 89 66.3
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 3.0e-23 112.5 78 73.1
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 6.9e-20 101.3 149 37.6
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.1e-12 75.9 55 76.4
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.9e-07 58.9 67 50.7


User provided reference genes

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